Glyma18g53770 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g53770

Feature Type:	gene_model
Chromosome:	Gm18
Start:	62047725
stop:	62052506
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g53770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G59340	AT	Annotation by Michelle Graham. TAIR10: Eukaryotic protein of unknown function (DUF914) \| chr3:21928971-21931030 REVERSE LENGTH=333	SoyBase	E_val: 2.00E-156	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2766	KOG	Predicted membrane protein	JGI		ISS
PTHR14233	Panther	DUF914-RELATED	JGI		ISS
PTHR14233:SF3	Panther	DUF914/ANTHOCYANIN MEMBRANE PROTEIN-RELATED	JGI		ISS
PF06027	PFAM	Eukaryotic protein of unknown function (DUF914)	JGI		ISS
UniRef100_G7KWQ4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Solute carrier family 35 member F1 n=1 Tax=Medicago truncatula RepID=G7KWQ4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F41C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F41C related cluster n=1 Tax=unknown RepID=UPI000233F41C	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g53770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g53770

Paralog	Evidence	Comments
Glyma08g47720	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g53770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g299800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g53770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g53770

Limit To All Plant Sequences

>Glyma18g53770.1   sequence type=CDS   gene model=Glyma18g53770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTTCGACTTTGGCAGGATTTGGACCCCAAACACGTTGATAGGTCTTGGCTTGGGACAGTTTCTTTCTCTTCTCATCACTTCCACCGGCTTCACTTCTTCTCAATTGGCTAAAAAAGGAATTAATGCTCCTACTTCACAGTCGTTTCTGAACTATGTGTTCTTGTCTCTTGTCTATGGAACTATTCTCCTCTATCGAAGGAAAGCACTCAAGGCAAAATGGTACTATTATATAATTCTCGGATTGGTTGATGTAGAAGCAAATTTTCTTGTTGTGAAGGCATACCAATACACCTCACTTACAAGTGTGATGCTGCTTGACTGCTGGTCAATTCCGTCCGTCATGCTTCTTACATGGCTTTTCTTGAAAACAAAATATAGATTCAAAAAGATTACCGGTGTAGTTGTTTGCGTTGCTGGCCTTGTCTTGGTTGTGTTTTCTGACGTTCATTCAGGTGACCGTGCAGGTGGAAGCAATCCTCGTAAAGGGGACCTTCTTGTTATTGCTGGTGCTACCTTGTATGCAATCAGTAATGTCAGTGAGGAATTTCTTGTGAAAAATGCTGATAGAGTTGAGCTTATGGCAATGTTAGGTCTCTCTGGTGGCATTATCAGTGCCATTCAAATAAGCATACTTGAGCGCAATGAACTTAAATCTATTCATTGGTCGGCAGAGGCGGCGCTTCCTTTTGTTGGATTTGCAGTGGCCATGTTTATGTTTTACTCTTTAGTCCCTGTTCTACTTAAGATCAATGGTTCTACCATGCTAAATTTGTCTCTGTTGACCTCAGACATGTGGGCTGTCTTAATTCGCATTTTTGCTTACCATGAGAAGGTTGATTGGATGTACTTTGTGTCATTTGGTGCCGTTACCATTGGGCTCATAATCTATTCAGGAGGGGACATAGATGAGGATCAGCACCCTCCAAATGCTGCCATCGTTGATCTTGGCCCTGCAGTCAAACAAGATGAGGAAGCCAATTCAGGAAATCATAGCAAAGGAACTGCGGCTGGAAGCTCAAAAACATGGGTAGCTTAG

Predicted protein sequences of Glyma18g53770

Limit To All Plant Sequences

>Glyma18g53770.1   sequence type=predicted peptide   gene model=Glyma18g53770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMFDFGRIWTPNTLIGLGLGQFLSLLITSTGFTSSQLAKKGINAPTSQSFLNYVFLSLVYGTILLYRRKALKAKWYYYIILGLVDVEANFLVVKAYQYTSLTSVMLLDCWSIPSVMLLTWLFLKTKYRFKKITGVVVCVAGLVLVVFSDVHSGDRAGGSNPRKGDLLVIAGATLYAISNVSEEFLVKNADRVELMAMLGLSGGIISAIQISILERNELKSIHWSAEAALPFVGFAVAMFMFYSLVPVLLKINGSTMLNLSLLTSDMWAVLIRIFAYHEKVDWMYFVSFGAVTIGLIIYSGGDIDEDQHPPNAAIVDLGPAVKQDEEANSGNHSKGTAAGSSKTWVA*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain