Glyma18g53750 - SoyBase

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Report for Sequence Feature Glyma18g53750

Feature Type:	gene_model
Chromosome:	Gm18
Start:	62031808
stop:	62040174
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g53750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G59290	AT	Annotation by Michelle Graham. TAIR10: ENTH/VHS family protein \| chr3:21912796-21917474 FORWARD LENGTH=1024	SoyBase	E_val: 0	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
KOG2056	KOG	Equilibrative nucleoside transporter protein	JGI		ISS
PTHR12276	Panther	EPSIN/ENT-RELATED	JGI		ISS
PTHR12276:SF44	Panther		JGI		ISS
PF01417	PFAM	ENTH domain	JGI		ISS
UniRef100_A2Q4X4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Epsin, N-terminal; ENTH/VHS n=1 Tax=Medicago truncatula RepID=A2Q4X4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E119	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E119 related cluster n=1 Tax=unknown RepID=UPI000233E119	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g53750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g53750

Paralog	Evidence	Comments
Glyma08g47740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g53750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g299500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g53750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g53750

Limit To All Plant Sequences

>Glyma18g53750.1   sequence type=CDS   gene model=Glyma18g53750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAGGTTATTGGTCAAACTGTTAGGGACCTTAAAAGAGAAGTAAATAAGAAAGTGCTGAAAGTTCCTGGGATTGAACAGAAGGTTCTTGATGCTACCAGCAATGAACCATGGGGTCCTCATGGATCACTTCTTGCCGATATTGCTCAGGCAACCAGAAACCCTCATGAATACCAGATGATCATGTCAGTAATCTGGAAGCGAATTAATGACACTGGCAAGAATTGGCGACATGTCTACAAGGCTTTGACAGTACTAGAGTACTTGGTGGCTCATGGGTCAGAGAGAGTGATAGATGAGATCAGAGAACATGCTTATCAAATATCAACATTGTCCGATTTTCAATATATTGATTCCAGTGGAAGAGATCAAGGAAACAATGTCAGGAAGAAATCTCAAAGTCTGGTTATCCTTGTGAATGATAAAGAAAGAATCATAGAAGTTAGGCAGAAGGCTGCTGCTAACAGGGACAAGTTTCGCAACAATGCAGCAGGTGGAATGTATAGACCTGGTTCACATTCAAGCAGTGGAGCCTATGGTGACCGATATGATGATGATCGTTATGGAAGCAGGGAGGAAGATAGAAATGGCTATGGTTATGGAAGAGAAAGAGAATGGGGCAATAGAGATGATGATCAACATAGTCGTGATGGAGATCGTTATGGCAGAGATTATGAGGATCGTTATGGCAGGGATGGTTACAGAGATGACGACTACAGGGGAAGAAGCCGAAGCGTTGATTACCAATATGACACAAGAAGCAGGAGCTCTGATAGAGATCGTTGTGATGATGATGGACAACACTCATCTCGCGGAAGCAATGCTAAAGCTGAAGACCAATCTCTGGAAGCAAGGCTTGAGCGGAAACTTTCTGAGCAAAATATGGGTGCTCCTCCTAGCTATGAAGAAGCTGTTGGTGAATCTCGCAGCCCTGTACACAGTGAAAGAGATGCGGAAACTTCAGCACCATCTGCTCCTAGAGACTCCTCTCCTCATGTAAATGATAATCCTAGTCAAATCTCTGCTCCTACGGGATCTTTTCCTGTAAACAATAATCCAACCGAAGCAACTACTGCTGCATCTGGAGCCCAGGAAACTGAGACGACTGATGACTTTTTTGACCCACGTGGTCCTTCATCAGCTGCTCCTGCCGCCCCAGCCACCACTAACAGCGTTGAAATGGACTTGCTCGGTTCCCTCTCAGACTCATTCTCTTCAAATGCATTATCTCTTGTACCAGCTGCATCAGCAACTGCTGCCCCTGATGCAAATTCTGGATCAACAGCTTCCTTTGCAGCAGCACCATCTGGGTCCAATAATTTTGATCAGTCTTTTGAAGATCCATTTGGTGACTCGCCATTCAAGGCTTTTACTTCCACTGAAACTGCTCCATCTCAACCCCAGACATATCAGAGTATTGAGCCTTCCCAATCAAATGGTCTTAATGCAGAAACAAACTCTAACTATGGGTTTGGGGATTCATTTTCTGTTGTACCATACTCTGCTCCTGTTTCCTCTGACGCTCAACCTTTCTCTGCAAACTCTCAGTTTCCGTCTCAAGATATGTCATCTTCACAGCCAGAAACAGATATTCTTGCAGACATTCTTCCTCCTGCACCATTACCTGAGATGCATTCACAGCAAAACATTTCAGCACCTGCTTTTGACCATCCTTCTTCACCTTCCTTTCCAGCTTCATCTGGTCAAATGGCTTCACAACCATTTTCTGAACCAACGGGCCAATTCCCCCAGCAAGGTTTCTCAGCTGCAACCAGTCAACCCGCACAAACCTTTCCAGTTCCTACAGATCAATTTTCTCAACAACACTTTTCTGCTCCTAATGGCCAACCAGGACAAGTACAATCATCCTTTTCATCTCCCTCCAGTCAATATGCACAACAACCCTTTTCATCCCACGCTGGTCAACCTGGCTTGCATGCATTTTCATCGCCTACTGGCCAACATATGCAGTCACCTTTTGCTTCTCAAGGTGGCCAACCTGCACAATCAGGTAGTATGTATGGTGGATTGCACTCCCAGGGTGGATCTCCAACCATGTCTCCTCAATCCCAAAATGGATATAATGGGCATATGAATAGTGGAAACTTTGGATCAATGGCAGCTTTTCCATCACACATGGCTCCCCAAGCTCCAACAGGACAGCTGTCACAGGGCACCAACTTTCCCCATCATGGAGGATCTATTGCTCACACTGCTCCGCATTTGTCTTCTCACTCTCCAACTCATCAGCCATCACAGTTTAACAGCCAGAGCTTTACTGGACAACAAGGGAATGCCACCCCCCATAGCTCACCAATTACCAATCAATCACTTGCTTCACAATCAAATTCTTTAGTTTCTCAACCATCCAAGGACAAGTTTGAGACAAAATCAACAGTTTGGGCAGATACACTAAGCAGGGGATTGGTTAATTTGAATATATCTGGACCTAAAACAAATCCATTAGCAGATATTGGGGTTGACTTTGAAGCCATTAATAGGAGGGAAAAGAGAATGGAGAAGCCCACTACCACGGCTGTAACATCAACTGTAACTATGGGTAAAGCTATGGGATCGGGTTCAGGTATGGGTCGGTCTGGTGCTGGTTCTCTCAGGCCTCCTCCAAACCCAATGATGGGTTCTGGCATGGGCATGGGCATGGGCATGGGCATGGGCAATGGTCCTAGTGTTGGTATGGGTATGGGAGGCTATGGAGGCATGAATACATCTATGGGTATGGGAATGGGGGGGATGGGGGGAATGGGTATGGGACAAGGATACCATAACCAGATGCAACCCCCAACTAGATTGCCTCCTGGCTCCAACATACCAGGTAATTATAATAACTCTATGATGGGTCCAGGTAGTTATGGTCAACAGCCATATGGTAGTTATGGTCAACAGCCATATGGCGGCTACCGATGA

Predicted protein sequences of Glyma18g53750

Limit To All Plant Sequences

>Glyma18g53750.1   sequence type=predicted peptide   gene model=Glyma18g53750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKVIGQTVRDLKREVNKKVLKVPGIEQKVLDATSNEPWGPHGSLLADIAQATRNPHEYQMIMSVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDEIREHAYQISTLSDFQYIDSSGRDQGNNVRKKSQSLVILVNDKERIIEVRQKAAANRDKFRNNAAGGMYRPGSHSSSGAYGDRYDDDRYGSREEDRNGYGYGREREWGNRDDDQHSRDGDRYGRDYEDRYGRDGYRDDDYRGRSRSVDYQYDTRSRSSDRDRCDDDGQHSSRGSNAKAEDQSLEARLERKLSEQNMGAPPSYEEAVGESRSPVHSERDAETSAPSAPRDSSPHVNDNPSQISAPTGSFPVNNNPTEATTAASGAQETETTDDFFDPRGPSSAAPAAPATTNSVEMDLLGSLSDSFSSNALSLVPAASATAAPDANSGSTASFAAAPSGSNNFDQSFEDPFGDSPFKAFTSTETAPSQPQTYQSIEPSQSNGLNAETNSNYGFGDSFSVVPYSAPVSSDAQPFSANSQFPSQDMSSSQPETDILADILPPAPLPEMHSQQNISAPAFDHPSSPSFPASSGQMASQPFSEPTGQFPQQGFSAATSQPAQTFPVPTDQFSQQHFSAPNGQPGQVQSSFSSPSSQYAQQPFSSHAGQPGLHAFSSPTGQHMQSPFASQGGQPAQSGSMYGGLHSQGGSPTMSPQSQNGYNGHMNSGNFGSMAAFPSHMAPQAPTGQLSQGTNFPHHGGSIAHTAPHLSSHSPTHQPSQFNSQSFTGQQGNATPHSSPITNQSLASQSNSLVSQPSKDKFETKSTVWADTLSRGLVNLNISGPKTNPLADIGVDFEAINRREKRMEKPTTTAVTSTVTMGKAMGSGSGMGRSGAGSLRPPPNPMMGSGMGMGMGMGMGNGPSVGMGMGGYGGMNTSMGMGMGGMGGMGMGQGYHNQMQPPTRLPPGSNIPGNYNNSMMGPGSYGQQPYGSYGQQPYGGYR*

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