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Report for Sequence Feature Glyma18g53730

Feature Type:gene_model
Chromosome:Gm18
Start:62008590
stop:62012138
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g53730
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G05785AT Annotation by Michelle Graham. TAIR10: Got1/Sft2-like vescicle transport protein family | chr1:1730981-1732406 FORWARD LENGTH=135 SoyBaseE_val: 6.00E-56ISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG1743 KOG Ferric reductase-like proteins JGI ISS
PTHR21493Panther CGI-141-RELATED/LIPASE CONTAINING PROTEIN JGI ISS
PTHR21493:SF10Panther SUBFAMILY NOT NAMED JGI ISS
PF04178PFAM Got1/Sft2-like family JGI ISS
UniRef100_A2Q4X9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Got1-like protein n=1 Tax=Medicago truncatula RepID=A2Q4X9_MEDTR SoyBaseE_val: 4.00E-62ISS
UniRef100_UPI000233E118UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E118 related cluster n=1 Tax=unknown RepID=UPI000233E118 SoyBaseE_val: 8.00E-78ISS

Expression Patterns of Glyma18g53730
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g53730 not represented in the dataset
Glyma18g53730 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g53730
ParalogEvidenceComments
Glyma08g47760 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g53730 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g299400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g53730
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma18g53730
>Glyma18g53730.2   sequence type=transcript   gene model=Glyma18g53730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCAGTGACTGTCTCAACCTTAGTTTTTAAAAAAGCAGAAGCAGAAGCAGCATCAGCATCGAGTATCCTCTTCCTTCTCCTTCTTCCGCATCAACTCGTCTTATTAGAGTTTTTACTAATCAATTATGGCTTACGAGATAACCGAGATAAAGAGGGTTGGCATTTTGCTTGGTTGGCGTTCCACGTGGGCACTTTTCACTAATAGAGCCAACTTTAAGGGTTCTGCATCATTTCTTCTAGGTCTCTTTTTCATCTTTGTGAGGTGGCCAATTGTTGGTATAATACTTGAAATATACGGTTGTGTTTTTCTCTTCAGTGGATTTTGGTCATCTATCAAAGTGTTCCTCTACCATATCCCTGTTGTTGGATGGATTATACAGTTTATCTCTCCTCCTTGATTGTCACAGAAGGGATTTAACGGATAGCCTCTTAGTATATGGCTAATCATGGGTTTCGATTGTCTTGGTAATTTTTCCAATGACTTGTGTATGAATGCAATGTCTTGGCTAGTTTTTCCAAGAGTTTGCATCAGGCAAATTAGCTTCCTTTAGTGAGAAGTATCGCAGCATGCAATTTATGTAAAAGAGTTGGTACTTGGTAGGCTAATTTTGTTGTTTCAAGGCTCATATATACAAGCTGGTTATGCTGTTCAGGCTCGCTACTGATGTCAGACTGAACATATGTTTACTTTTGGCTTTATGCGCCTTGTCATTGTCAAGACCTCGCCAAAGGATGTTGAAATTCTTTTTGTATATTTTTGGTTTATGAAAGATTCACGGGTTATTAGTGTTAGTGTTGGAATTAAACCTTACACTGTCAAAAACATCTAGAGAAATGACTTGGGTTTTCATGAATGGAGCCTTTCTATTATAA
Coding sequences of Glyma18g53730
>Glyma18g53730.1   sequence type=CDS   gene model=Glyma18g53730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTACGAGATAACCGAGATAAAGAAGATTGGTATAGGCCTAATTGGTTTCGGCTTATTTTTCACATTTCTTGGCATAATTCTTTTCTTTGACCGTGGTTTGCTTGCTCTGGGAAATATTTTTTCCTTGGCAGGGGTTGGCATTTTGCTTGGTTGGCGTTCCACGTGGGCACTTTTCACTAATAGAGCCAACTTTAAGGGTTCTGCATCATTTCTTCTAGGTCTCTTTTTCATCTTTGTGAGGTGGCCAATTGTTGGTATAATACTTGAAATATACGGTTGTGTTTTTCTCTTCAGTGGATTTTGGTCATCTATCAAAGTGTTCCTCTACCATATCCCTGTTGTTGGATGGATTATACAGTTTATCTCTCCTCCTTGA

>Glyma18g53730.2   sequence type=CDS   gene model=Glyma18g53730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTACGAGATAACCGAGATAAAGAGGGTTGGCATTTTGCTTGGTTGGCGTTCCACGTGGGCACTTTTCACTAATAGAGCCAACTTTAAGGGTTCTGCATCATTTCTTCTAGGTCTCTTTTTCATCTTTGTGAGGTGGCCAATTGTTGGTATAATACTTGAAATATACGGTTGTGTTTTTCTCTTCAGTGGATTTTGGTCATCTATCAAAGTGTTCCTCTACCATATCCCTGTTGTTGGATGGATTATACAGTTTATCTCTCCTCCTTGA
Predicted protein sequences of Glyma18g53730
>Glyma18g53730.1   sequence type=predicted peptide   gene model=Glyma18g53730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYEITEIKKIGIGLIGFGLFFTFLGIILFFDRGLLALGNIFSLAGVGILLGWRSTWALFTNRANFKGSASFLLGLFFIFVRWPIVGIILEIYGCVFLFSGFWSSIKVFLYHIPVVGWIIQFISPP*

>Glyma18g53730.2   sequence type=predicted peptide   gene model=Glyma18g53730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYEITEIKRVGILLGWRSTWALFTNRANFKGSASFLLGLFFIFVRWPIVGIILEIYGCVFLFSGFWSSIKVFLYHIPVVGWIIQFISPP*






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