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Report for Sequence Feature Glyma18g53720

Feature Type:gene_model
Chromosome:Gm18
Start:61995393
stop:61996892
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g53720
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G05800AT Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr1:1741204-1742619 FORWARD LENGTH=471 SoyBaseE_val: 0ISS
GO:0006629GO-bp Annotation by Michelle Graham. GO Biological Process: lipid metabolic process SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009695GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process SoyBaseN/AISS
GO:0030308GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of cell growth SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0005811GO-cc Annotation by Michelle Graham. GO Cellular Compartment: lipid particle SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0004806GO-mf Annotation by Michelle Graham. GO Molecular Function: triglyceride lipase activity SoyBaseN/AISS
GO:0008970GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphatidylcholine 1-acylhydrolase activity SoyBaseN/AISS
GO:0047714GO-mf Annotation by Michelle Graham. GO Molecular Function: galactolipase activity SoyBaseN/AISS
KOG4569 KOG Predicted lipase JGI ISS
PTHR21493Panther CGI-141-RELATED/LIPASE CONTAINING PROTEIN JGI ISS
PTHR21493:SF9Panther SUBFAMILY NOT NAMED JGI ISS
PF01764PFAM Lipase (class 3) JGI ISS
UniRef100_A2Q4Y5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Lipase n=1 Tax=Medicago truncatula RepID=A2Q4Y5_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI0002337DD9UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337DD9 related cluster n=1 Tax=unknown RepID=UPI0002337DD9 SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g53720
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g53720
ParalogEvidenceComments
Glyma08g47770 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g53720 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g299300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g53720
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g53720
>Glyma18g53720.2   sequence type=CDS   gene model=Glyma18g53720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTGTCACACACCTACCCAGCATCAGCAGAACCAACAATGATCACATCACATTCTCGCAAACCTTTCACCCAATAAAGTCTCACCCCTTTGGGCAGATTTCACTTCCCATGAGAAAAAACCATGACTTGTCTCCCCTTAGCCACTCAATTGTTGCTTCGGGTTCCGTACTAGGAATCACCTCCTCCGAGTCTATTCATAATGTTTCCAAAACAACTACAAAGCCCACACACACTTCTACTCTTTCCAATTTCTGGAGAGAGGTTCAAGGGTGCAACAACTGGGAAAACCTTTTGGAGCCTTTGCACCCTCTTCTCCGCCAAGAGATCATTCGCTATGGCGAGTTCGTAACGGCCTCATACAAGGCCTTTGATCTCAACCCAAACTCCAAACGATACTTGAACTGCAAGTATGGGAAGAAGAGCATGTTGAGTGAGGTGGGAATGTCAAACTCTGGCTACAACATCACAAAGTACATCTATGCCACACCTGACATAAACCTCCCCAACATGACTTATAACAACTCTTCTTCATCTTCTGCTCGGTGGATTGGTTACGTGGCTGTGTCCTCAGATGAAGCTGTCAAGAGACTTGGCAGGAGAGACATATTGGTAACTTTCCGCGGAACAGTTACCAATCAAGAATGGATTTCGAACTTGATGAGTTCATTGACACCGGCCATGCTTGATCCCTATAATCCACGACCTGAAGTGAAGGTGGAGTCAGGGTTTCTCTCTCTTTACACCTCAGATGAGAGCTCAGCTTCCAACAAGTTTGGACTCGAGAGTTGCAGGGAACAGCTTCTCTCTGAGGTGTCGAGGTTGATGAACAAGTACAAAGGGGAGAAAGAGAACCTTAGCATATCCTTGGCTGGTCACAGCATGGGGAGTGCTTTGGCCATCTTGCTTTCCTATGACATAGCCGAGCTTGGATTGAACAAAAAAAGTGGCACTCACGAGGTGCCAGTTACTGTGTTCTCCTTTGGGGGACCAAGAGTTGGTAACTCCGAATTCAAGCACCGGTGTGAGGAGTTGGGAGTGAAAGTACTAAGAATAGCGAATGTTAATGACCCCATCACGAAACTACCCGGTGTTGTGTTCAACGAGAATTTTAGGGTTTTGTTGGGAGGGAGGTACGAGTTTCCTTGGAGTTGCTCGTGTTATGCTCACGTGGGGGTTGAACTACTGCTTGATTTCTTCAACGTGCAAAACCCATCTTGTGTTCATGACTTGGATAGCTATATTGGCCTTCTTAGGCGTCCCAATAAAGATGAAGTGCTAATGAAGCGCGAAAGGGATGAAGATGGAGTGAACTCTTTGTTGGAGAAAGCAAGAGAGTTGCTCTTCAACTCGCAAAGCATGAAAATTTTGGCCGGAGTGTTAACTGCATACAACTACCATGATTTGCTGAATTCAGTCTCAAGGGACATACTGTGTTCTTGGAGCGATGAACTGCTTTTTGGCTTGGTTTTTTTTGTTGTTGTAGGTAGTAACTAG
Predicted protein sequences of Glyma18g53720
>Glyma18g53720.2   sequence type=predicted peptide   gene model=Glyma18g53720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASVTHLPSISRTNNDHITFSQTFHPIKSHPFGQISLPMRKNHDLSPLSHSIVASGSVLGITSSESIHNVSKTTTKPTHTSTLSNFWREVQGCNNWENLLEPLHPLLRQEIIRYGEFVTASYKAFDLNPNSKRYLNCKYGKKSMLSEVGMSNSGYNITKYIYATPDINLPNMTYNNSSSSSARWIGYVAVSSDEAVKRLGRRDILVTFRGTVTNQEWISNLMSSLTPAMLDPYNPRPEVKVESGFLSLYTSDESSASNKFGLESCREQLLSEVSRLMNKYKGEKENLSISLAGHSMGSALAILLSYDIAELGLNKKSGTHEVPVTVFSFGGPRVGNSEFKHRCEELGVKVLRIANVNDPITKLPGVVFNENFRVLLGGRYEFPWSCSCYAHVGVELLLDFFNVQNPSCVHDLDSYIGLLRRPNKDEVLMKRERDEDGVNSLLEKARELLFNSQSMKILAGVLTAYNYHDLLNSVSRDILCSWSDELLFGLVFFVVVGSN*






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