Glyma18g53700 - SoyBase

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Report for Sequence Feature Glyma18g53700

Feature Type:	gene_model
Chromosome:	Gm18
Start:	61964546
stop:	61968720
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g53700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13420	AT	Annotation by Michelle Graham. TAIR10: Aldolase-type TIM barrel family protein \| chr5:4302080-4304212 REVERSE LENGTH=438	SoyBase	E_val: 0	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0009060	GO-bp	Annotation by Michelle Graham. GO Biological Process: aerobic respiration	SoyBase	N/A	ISS
GO:0009809	GO-bp	Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process	SoyBase	N/A	ISS
GO:0033587	GO-bp	Annotation by Michelle Graham. GO Biological Process: shikimate biosynthetic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004801	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	SoyBase	N/A	ISS
KOG2772	KOG	Transaldolase	JGI		ISS
PTHR10683	Panther	TRANSALDOLASE	JGI		ISS
PF00923	PFAM	Transaldolase	JGI		ISS
UniRef100_G7KXR2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transaldolase n=1 Tax=Medicago truncatula RepID=G7KXR2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N5E4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5E4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g53700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g53700

Paralog	Evidence	Comments
Glyma08g47790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g53700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g299100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g53700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g53700

Limit To All Plant Sequences

>Glyma18g53700.2   sequence type=transcript   gene model=Glyma18g53700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTATAAAGTAGTAAAAAAAATATAATGATATAAACCGAACCAAACGCACCCTACGCACCTACTCCATCCTCCGCTTCGTGACTTGCAGCAATTCCCAATGGCTTCCGTTTCCAAGCTCTCAACGCCAAATCCACTTGCTTCCTTATCAGAAGCGCTTCGCCCCCGAGATTCTCGCTTCCTCACCTTCAAACCTTCTTCCATCGCTTTTAATCACAAAACTAACCTATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTACGGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGTGCTTCATGATCTTTATGAGAAAGAAGGGCAGAGTCCATGGTATGATAATCTCTGCAGACCTGTTACAGACCTGCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGGGAACTTGTGCAAACAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTAGTGAAGGATATCCAAGATGCTTGCAGACTATTTGAACCAATCTATGATCAAACAGATGGTGGTGATGGGTATGTTTCTGTTGAAGTATCTCCTAGGCTCGCTGATGACACTGAGGGAACCATAGAAGCTGCAAAATGGCTTCATAAAGTGGTTGATCGCCCCAATGTGTATATTAAGATTCCTGCTACAGAGGCATGTGTGCCTTCAATTAAGGAAGTTATTGCTAATGGGATAAGTGTGAATGTGACGCTGATATTCTCTCTTGCAAGATATGAAGCTGTAATTGATGCATACTTGGATGGTCTTGAGGCATCTGAGTTAAATGACCTCTCTAGAGTTACAAGTGTTGCCTCTTTCTTCGTCAGTAGAGTGGACACCCTCATTGACAAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAAGGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTTTCTGGTCCAAGGTGGGAAGCTCTAGTTAAAAAGGGGGCCAAGAAGCAAAGGCTCCTCTGGGCCTCAACCAGTGTAAAGAATCCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTGTAAGCCATCATTTTTTTCACTTTCTCAATTTGTTTATAATTATGATCGGGTTGATCTTAAAGCTAATATTATTAGCTTTAATGGACCTGTTTGTTGTCTGGCCTTGTTTGTTCTAAAAAACTTAAAAACCAAAGTTTCCTTTGCTGCATCTCACATAGCAATACCTTCTTACTTTACAGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTACCGTATCCAGGACAATAGACTCAAATGCATCTGAAGCTGAAGGAATATACAATGCTCTCCAGAAATTGGGTATTGACTGGAGCTTTGTTGGTTCCCAGCTTGAACTTGAAGGAGTGGACTCGTTTAAGAAGAGCTTTGACAGCCTCCTGGATTCTCTGCAAGAGAAGGCAAACTCTCTTAAGTTGGTCAGCCATTGAAGTGTGAACGTCATAGTTAGTAATGCAGTGCTATGTATGAAGTGATTTATGGATTAATAAAAGGCAGTGGCTGTGCATTTTGTGCTGCTGTAAATGTGCTTTATGGAGTCATTTATTTAGACGATAGTGATACAATATAAATGGGAAATTGTCCGCTTCAAGTAAAGCGTTTTGTTACTTTCCCACTATTCAATGGTTGTGCGGTTTTATTCGTGTTGATGTCAATTATGTTTCAAAGTCTTACATTTTAGTTCGAATTTTTAATTGAAGTTTTGTTGTAATCGATGACACAACACATGCATGTTTAGCTAATAAATTGAGTGCAGTTCACCAAGTCACTTCCCTTAGGCCAGTGACAGCGAAAACGACACAAGGTCGTAAGGGAAATTGGGATTTGTGGAAGCTATATCCTTTCAATGTAACTTTGCAACGAGGTTCAGCCTTAAAGGACAGGCCCAAACCCAAATTGAACACAATTGTATTACATAGGAAGATCACATTTCTGGACCCAAAAAAAGGATTGCTCCTTCACTACTATCTCTTTTTCTTACTCTAGATGCAGTTATCATTCAACTTCGTATTAGTTATCATTACCAAAAATTTTATAGATATG

Coding sequences of Glyma18g53700

Limit To All Plant Sequences

>Glyma18g53700.1   sequence type=CDS   gene model=Glyma18g53700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCGTTTCCAAGCTCTCAACGCCAAATCCACTTGCTTCCTTATCAGAAGCGCTTCGCCCCCGAGATTCTCGCTTCCTCACCTTCAAACCTTCTTCCATCGCTTTTAATCACAAAACTAACCTATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTACGGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGTGCTTCATGATCTTTATGAGAAAGAAGGGCAGAGTCCATGGTATGATAATCTCTGCAGACCTGTTACAGACCTGCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGGGAACTTGTGCAAACAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTAGTGAAGGATATCCAAGATGCTTGCAGACTATTTGAACCAATCTATGATCAAACAGATGGTGGTGATGGGTATGTTTCTGTTGAAGTATCTCCTAGGCTCGCTGATGACACTGAGGGAACCATAGAAGCTGCAAAATGGCTTCATAAAGTGGTTGATCGCCCCAATGTGTATATTAAGATTCCTGCTACAGAGGCATGTGTGCCTTCAATTAAGGAAGTTATTGCTAATGGGATAAGTGTGAATGTGACGCTGATATTCTCTCTTGCAAGATATGAAGCTGTAATTGATGCATACTTGGATGGTCTTGAGGCATCTGAGTTAAATGACCTCTCTAGAGTTACAAGTGTTGCCTCTTTCTTCGTCAGTAGAGTGGACACCCTCATTGACAAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAAGGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTTTCTGGTCCAAGGTGGGAAGCTCTAGTTAAAAAGGGGGCCAAGAAGCAAAGGCTCCTCTGGGCCTCAACCAGTGTAAAGAATCCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTACCGTATCCAGGACAATAGACTCAAATGCATCTGAAGCTGAAGGAATATACAATGCTCTCCAGAAATTGGGTATTGACTGGAGCTTTGTTGGTTCCCAGCTTGAACTTGAAGGAGTGGACTCGTTTAAGAAGAGCTTTGACAGCCTCCTGGATTCTCTGCAAGAGAAGGCAAACTCTCTTAAGTTGGTCAGCCATTGA

>Glyma18g53700.2   sequence type=CDS   gene model=Glyma18g53700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCGTTTCCAAGCTCTCAACGCCAAATCCACTTGCTTCCTTATCAGAAGCGCTTCGCCCCCGAGATTCTCGCTTCCTCACCTTCAAACCTTCTTCCATCGCTTTTAATCACAAAACTAACCTATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTACGGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGTGCTTCATGATCTTTATGAGAAAGAAGGGCAGAGTCCATGGTATGATAATCTCTGCAGACCTGTTACAGACCTGCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGGGAACTTGTGCAAACAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTAGTGAAGGATATCCAAGATGCTTGCAGACTATTTGAACCAATCTATGATCAAACAGATGGTGGTGATGGGTATGTTTCTGTTGAAGTATCTCCTAGGCTCGCTGATGACACTGAGGGAACCATAGAAGCTGCAAAATGGCTTCATAAAGTGGTTGATCGCCCCAATGTGTATATTAAGATTCCTGCTACAGAGGCATGTGTGCCTTCAATTAAGGAAGTTATTGCTAATGGGATAAGTGTGAATGTGACGCTGATATTCTCTCTTGCAAGATATGAAGCTGTAATTGATGCATACTTGGATGGTCTTGAGGCATCTGAGTTAAATGACCTCTCTAGAGTTACAAGTGTTGCCTCTTTCTTCGTCAGTAGAGTGGACACCCTCATTGACAAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAAGGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTTTCTGGTCCAAGGTGGGAAGCTCTAGTTAAAAAGGGGGCCAAGAAGCAAAGGCTCCTCTGGGCCTCAACCAGTGTAAAGAATCCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTGTAAGCCATCATTTTTTTCACTTTCTCAATTTGTTTATAATTATGATCGGGTTGATCTTAAAGCTAATATTATTAGCTTTAATGGACCTGTTTGTTGTCTGGCCTTGTTTGTTCTAA

Predicted protein sequences of Glyma18g53700

Limit To All Plant Sequences

>Glyma18g53700.1   sequence type=predicted peptide   gene model=Glyma18g53700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASVSKLSTPNPLASLSEALRPRDSRFLTFKPSSIAFNHKTNLSASLRSIHSLPLKTSLRIKCSQTDGNGSPAKRTVLHDLYEKEGQSPWYDNLCRPVTDLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQTGKDIESAYWELVVKDIQDACRLFEPIYDQTDGGDGYVSVEVSPRLADDTEGTIEAAKWLHKVVDRPNVYIKIPATEACVPSIKEVIANGISVNVTLIFSLARYEAVIDAYLDGLEASELNDLSRVTSVASFFVSRVDTLIDKALEKIGTPVALNLRGKAAVAQAALAYQLYQRKFSGPRWEALVKKGAKKQRLLWASTSVKNPAYSDTLYVAPLIGPDTVSTMPDQALQAFIDHGTVSRTIDSNASEAEGIYNALQKLGIDWSFVGSQLELEGVDSFKKSFDSLLDSLQEKANSLKLVSH*

>Glyma18g53700.2   sequence type=predicted peptide   gene model=Glyma18g53700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASVSKLSTPNPLASLSEALRPRDSRFLTFKPSSIAFNHKTNLSASLRSIHSLPLKTSLRIKCSQTDGNGSPAKRTVLHDLYEKEGQSPWYDNLCRPVTDLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQTGKDIESAYWELVVKDIQDACRLFEPIYDQTDGGDGYVSVEVSPRLADDTEGTIEAAKWLHKVVDRPNVYIKIPATEACVPSIKEVIANGISVNVTLIFSLARYEAVIDAYLDGLEASELNDLSRVTSVASFFVSRVDTLIDKALEKIGTPVALNLRGKAAVAQAALAYQLYQRKFSGPRWEALVKKGAKKQRLLWASTSVKNPAYSDTLYVAPLIGPDTVSHHFFHFLNLFIIMIGLILKLILLALMDLFVVWPCLF*

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