Report for Sequence Feature Glyma18g53680
Feature Type: gene_model
Chromosome: Gm18
Start: 61944033
stop: 61949565
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g53680
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G20370 AT
Annotation by Michelle Graham. TAIR10: PEBP (phosphatidylethanolamine-binding protein) family protein | chr4:11001011-11002965 REVERSE LENGTH=175
SoyBase E_val: 5.00E-81 ISS
GO:0009909 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of flower development
SoyBase N/A ISS
GO:0009911 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development
SoyBase N/A ISS
GO:0048573 GO-bp
Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering
SoyBase N/A ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
GO:0008429 GO-mf
Annotation by Michelle Graham. GO Molecular Function: phosphatidylethanolamine binding
SoyBase N/A ISS
KOG3346
KOG
Phosphatidylethanolamine binding protein
JGI ISS
PTHR11362 Panther
PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN
JGI ISS
PF01161 PFAM
Phosphatidylethanolamine-binding protein
JGI ISS
UniRef100_E3WC95 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Flowering locus T n=1 Tax=Glycine max RepID=E3WC95_SOYBN
SoyBase E_val: 4.00E-126 ISS
UniRef100_E3WC95 UniRef
Annotation by Michelle Graham. Best UniRef hit: Flowering locus T n=1 Tax=Glycine max RepID=E3WC95_SOYBN
SoyBase E_val: 4.00E-126 ISS
Proteins Associated with Glyma18g53680
Locus Gene Symbol Protein Name
FT1a Flowering locus T gene 1a
FT1a Flowering Locus T 1 gene a
Expression Patterns of Glyma18g53680
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma18g53680
Paralog Evidence Comments
Glyma08g47810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g53680 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g298900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g53680
Transcripts of Glyma18g53680
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g53680.2 sequence type=transcript gene model=Glyma18g53680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ACCAACTTATCGATATTAATTTATTATGCCTAGATCAACGGACCCTCTTGTTATTGGAGGTGTAATAGGAGATGTTTTGGAGCCTTTCACAAGTAGCGTTTCTATGGGGATAGTCTATAATAATTGCCCTCAAGTTATCAACTGCTGTGAGCTCAAACCCTCCAAAATCCTCAATCGACCAAGAATTGAAATTGGTGGAGATGACCTCAGGACCTTTTACACCCTGGTTATGGTGGATCCTGATGCACCTAGCCCAGGCAATCCAACCCAGAGAGAATATTTGCACTGGTTGATAACCAATATTCCTGCAACTACAGGGGCAAACTTCGGCTGGCGCCAGAATTTCAACACTAGAGACTTTGCTGAGATTTATAATCTTGGATTACCAGTAGCGGCCATGTACTTCAACTGTAAACGAGAAAATGATCAAAGCAGTGGAAGAAGAAGATAATAGAAAGAAAACTATTATTAATATATATCCCGAGTTTTTATCAGCTCAACATGAAATAATAAATAACTTCTTTTTATATTTAAGTATTTATTAAATATAAATATATATTATATAAAAAAATCAACACGAATTTCAATTAAAAAATAATATTAGTATGAAAGAGCTAATGGCCCCTAAAGAAAAAGGTGCCTAGGGCATCAGCAATAAGCTTAGTATGAAGGTCATTTGGACATACCTGCCAAACTGAAGATCTTCAGACGAGCCATTAATTTCCCAGCAAGGTAATCTGCAATCTGATTAGCTTCTCTGAATGTGTGTTGGAACACCAGATTCCACTCAAGCTGCATGAAGGTTCTGATCTTGGTAATCAAAGGAGACACATTCACAAATAATTATGTACGTATGAGGAAATAATCGATTAATCTACTTGTTCTTCAAACTCATATTTATGAAGAGCAAAGTAATTGATTAATTCTGTTGATTTTATAAATAACATCTTTGTTTTTTCA
>Glyma18g53680.3 sequence type=transcript gene model=Glyma18g53680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ACCAACTTATCGATATTAATTTATTATGCCTAGATCAACGGACCCTCTTGTTATTGGAGGTGTAATAGGAGATGTTTTGGAGCCTTTCACAAGTAGCGTTTCTATGGGGATAGTCTATAATAATTGCCCTCAAGTTATCAACTGCTGTGAGCTCAAACCCTCCAAAATCCTCAATCGACCAAGAATTGAAATTGGTGGAGATGACCTCAGGACCTTTTACACCCTGGTTATGGTGGATCCTGATGCACCTAGCCCAGGCAATCCAACCCAGAGAGAATATTTGCACTGGTTGATAACCAATATTCCTGCAACTACAGGGGCAAACTTCGGTATGTGCACAATTCTTATTTTCTATATATCTTCCTTGTACACCTTTTATATTTAATTGGCAGTAAATTATAAAGCCTTCGTGTTATTATGTCTGATCAAAGTAAATCTCAAATTTCTTTAAATTGATATTACTTTCAATCAGTTATAAAACATCTTATTAATT
Coding sequences of Glyma18g53680
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g53680.1 sequence type=CDS gene model=Glyma18g53680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCTAGATCAACGGACCCTCTTGTTATTGGAGGTGTAATAGGAGATGTTTTGGAGCCTTTCACAAGTAGCGTTTCTATGGGGATAGTCTATAATAATTGCCCTCAAGTTATCAACTGCTGTGAGCTCAAACCCTCCAAAATCCTCAATCGACCAAGAATTGAAATTGGTGGAGATGACCTCAGGACCTTTTACACCCTGGTTATGGTGGATCCTGATGCACCTAGCCCAGGCAATCCAACCCAGAGAGAATATTTGCACTGGTTGATAACCAATATTCCTGCAACTACAGGGGCAAACTTCGGAGAAGAGATTGTCTCCTATGAAAGTCCACGTCCAATAGTAGGGATTCATCGAATAGTTTTTGTGTTATTTCGTCAGCTGCGTAGACTAACTCTGCAACCTCCAGGCTGGCGCCAGAATTTCAACACTAGAGACTTTGCTGAGATTTATAATCTTGGATTACCAGTAGCGGCCATGTACTTCAACTGTAAACGAGAAAATGATCAAAGCAGTGGAAGAAGAAGATAA
>Glyma18g53680.2 sequence type=CDS gene model=Glyma18g53680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCTAGATCAACGGACCCTCTTGTTATTGGAGGTGTAATAGGAGATGTTTTGGAGCCTTTCACAAGTAGCGTTTCTATGGGGATAGTCTATAATAATTGCCCTCAAGTTATCAACTGCTGTGAGCTCAAACCCTCCAAAATCCTCAATCGACCAAGAATTGAAATTGGTGGAGATGACCTCAGGACCTTTTACACCCTGGTTATGGTGGATCCTGATGCACCTAGCCCAGGCAATCCAACCCAGAGAGAATATTTGCACTGGTTGATAACCAATATTCCTGCAACTACAGGGGCAAACTTCGGCTGGCGCCAGAATTTCAACACTAGAGACTTTGCTGAGATTTATAATCTTGGATTACCAGTAGCGGCCATGTACTTCAACTGTAAACGAGAAAATGATCAAAGCAGTGGAAGAAGAAGATAA
>Glyma18g53680.3 sequence type=CDS gene model=Glyma18g53680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCTAGATCAACGGACCCTCTTGTTATTGGAGGTGTAATAGGAGATGTTTTGGAGCCTTTCACAAGTAGCGTTTCTATGGGGATAGTCTATAATAATTGCCCTCAAGTTATCAACTGCTGTGAGCTCAAACCCTCCAAAATCCTCAATCGACCAAGAATTGAAATTGGTGGAGATGACCTCAGGACCTTTTACACCCTGGTTATGGTGGATCCTGATGCACCTAGCCCAGGCAATCCAACCCAGAGAGAATATTTGCACTGGTTGATAACCAATATTCCTGCAACTACAGGGGCAAACTTCGGTATGTGCACAATTCTTATTTTCTATATATCTTCCTTGTACACCTTTTATATTTAA
Predicted protein sequences of Glyma18g53680
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g53680.1 sequence type=predicted peptide gene model=Glyma18g53680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPRSTDPLVIGGVIGDVLEPFTSSVSMGIVYNNCPQVINCCELKPSKILNRPRIEIGGDDLRTFYTLVMVDPDAPSPGNPTQREYLHWLITNIPATTGANFGEEIVSYESPRPIVGIHRIVFVLFRQLRRLTLQPPGWRQNFNTRDFAEIYNLGLPVAAMYFNCKRENDQSSGRRR*
>Glyma18g53680.2 sequence type=predicted peptide gene model=Glyma18g53680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPRSTDPLVIGGVIGDVLEPFTSSVSMGIVYNNCPQVINCCELKPSKILNRPRIEIGGDDLRTFYTLVMVDPDAPSPGNPTQREYLHWLITNIPATTGANFGWRQNFNTRDFAEIYNLGLPVAAMYFNCKRENDQSSGRRR*
>Glyma18g53680.3 sequence type=predicted peptide gene model=Glyma18g53680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPRSTDPLVIGGVIGDVLEPFTSSVSMGIVYNNCPQVINCCELKPSKILNRPRIEIGGDDLRTFYTLVMVDPDAPSPGNPTQREYLHWLITNIPATTGANFGMCTILIFYISSLYTFYI*