Glyma18g53650 - SoyBase

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Report for Sequence Feature Glyma18g53650

Feature Type:	gene_model
Chromosome:	Gm18
Start:	61917230
stop:	61922721
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g53650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13390	AT	Annotation by Michelle Graham. TAIR10: no exine formation 1 \| chr5:4292809-4296572 FORWARD LENGTH=1123	SoyBase	E_val: 0	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
UniRef100_I1N5E0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5E0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LYR7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: No exine formation 1 n=1 Tax=Arabidopsis thaliana RepID=Q9LYR7_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g53650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g53650

Paralog	Evidence	Comments
Glyma08g47830	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g53650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g298700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g53650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g53650

Limit To All Plant Sequences

>Glyma18g53650.1   sequence type=CDS   gene model=Glyma18g53650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGCAACCCCGCGCATTCCGTCCCTACATACCCATATCTTCCTCCACCAGCGCCCCTTCCTTCTCCTCCCCAAACCCTAACGACTCCGTTACTTCGCCGTCGCTTCACGGCCATGCCAACAACGCCACCACCTCTTCCAGATCCCTCAAGAACCCTACCTCCTTCTGCCACAACTACCGTATCGCCATCGCCCTGGTCCCCTCCGCCCTCTTCCTCCTCGACCTCGGCGGCACCACCGTGGTCGCCACCCTGGTGGTGGGCCTCATGATCTCCTACATCCTTGACTCCCTCAACCTGAAGCCCGCCGCCTTCTTCGCCGTGTGGTTCTCCCTCATCTTCTCCCAGCTCGCTTTCTTCCTCTCCGCCTCCCCCTCCCTCTTCTCCGCCTTCAACTCCTCCCTTGCCGTCGCCGTCCTCGCCTCCTTCCTCTGCGCCCACACCACCTTCCTCCTCGGCGTCTGGTCCTCCCTGAACTTCAAGTGGCTCCTCCTCGAAAACCCTTCCATCGCCGTCTCCCTCGAGCGCCTCCTCTTCGCCTGCCTCCCCATCTCTGCCTCCGCCCTCTTCGCCTGGGCCTCCATCGCCGCCGTGGGCATCACCAACGCCGCCTACTACCTCGCCGCCTTCAACTGCTGCTTCTACTTGCTCTTCTCCGTCCCCCGTGTTTCCTCCTTCAAGGCCAAACACGAGGCACGCTACCACGGCGGCGAGGCCCCCCGTGACAGCTTCATCCTGGGCCCACTCGAGAGCTGCCTCCACACTCTCAACCTTCTCTTCGTCCCTCTCTTGTTCCACATCGCCTCTCATTACTCCCTCGTTCTCTCTTCCCCTGCTTCCTTCTGCGACCTTCTCCTTCTCTTCTTCGTCCCTTTCCTCTTTCAGCTTTATGCTTCCACCCGAGGGGCGCTCTGGTGGATCACCACCAACCCCGACCAGCTCCACAGCATCCGCGTTGTCAACGGCGCCGTTGCCCTGGTGTTTGTCGTCGTTGCATTGGAGGTCAGGGTCGTCTTCCATTCCTTTGGGAGGTACATTCAGGTTCCCCCGCCACTCAATTATGTTCTTGTCACTCTCACCATGCTTGGAGGGGCTTCTGCTGCTGCCGCTTATGCCATGGGTATGGTTTTTGATGCCCTCAGCTCTGTTGCCTTCACTACTTCCGCTATTGTGGTCAGTGCTGCTGGAGCAGTTGTTGTGGGCTTTCCCTTGCTGTTCCTCCCTCTGCCTGCAGTTGCTGGCTTTTATTTGGCTCGTTTTTTTGAAAAGAAGAGTCTAATATCGTACTTTGCTTTTGTTATTCTTGGAAGTTTGATGGTTACATGGTTTGTTCTGCACAATTTCTGGGATTTAAATATTTGGATGGCAGGCATGTCCCTTAAATCTTTTTGTAAACTCATAATAGCAAATTCTGTCCTGGCTATGGCTATTCCTGGTTTAGCTCTTCTACCTTTAAAGCTGAACTTTTTATCTGAGGCTGGTCTGATAAGCCATGCATTGCTCTTATGCTACATTGAGAACCGATTTTTCAATTACTCTAGCATTTACTATTATGGATTTGAGGATGAGGTGATGTATCCTAGCTATATGGTTGTGATGACAACTTTATTGGGTTTGGCTTTGGTGAGAAGGCTATCTGTAGATCATCGAATTGGAGGAAAAGCAGTTTGGATTTTGACTTGCCTCTTTTCTTCAAAGCTGGCCATGTTGTTTATTTCATCAAAGTCCGTTGTATGGGTTTCAGCAGTTCTCTTGTTGGCTGTTTCTCCTCCATTGCTTCTTTACAGGGATAGATCCAAAACAACTTCTAGGATGAAACCATGGCAAGGTTATGCACATGCCTGTGTAGTTGCCTTGTCTGTATGGTTTTGCCGTGAAACAATTTTTGAAGCCCTCCAGTGGTGGAATGGAAGGTCTCCTTCAGATGGTTTAATTTTGGGTTTCTGCATACTGTTGACTGGATTGGCTTGTGTTCCAATTGTTGCTATTCATTTCTCTCATATTTTGTCTGCCAAAAGATGTTTAGTGCTGGTAGTGGCAACTGGTCTACTTTTTATTTTGATGCAGCCACCTCTTCCTGTGTCATTGTCTTACCGGTCAGACCTAATCAAGACTGCCCGTCACTCTGCAGATGATATCTCCATTTATGGCTATATAGCTGGCAAGCCTACCTGGCCTTCTTGGCTTCTTATTATTGCAATTTTGCTGACTCTGGCATCAGTTACATCTATTATACCCATTAAATACATTGTTGAATTGCGGACATTTTACTCCATTGCTATGGGGGTTGCCCTTGGTATCTACATTGCTGCTGAATACTTTCTCTGGGCTGGCATTCTGCATGTTCTCATTGTTGTCTCTATGGTTTGTGCCTCTGTTTTTGTTGTCTTCACTCATCTACCATCTGCTACAAGCACAAAGCTTTTGCCCTGGGTATTTGCTCTACTTGTAGCTCTCTTTCCTGTTACTTATCTTTTGGAGGGCCAGCTGAGAATTAAAAATATTCTTGAAGATAGTGAGATAGGAAATTTGGGTGAGGAGGAGAAGAAGCTTACAACATTGCTGGCAATAGAGGGTGCCCGGACATCCCTTCTTGGTCTATATGCAGCAATCTTCATGCTTATAGCCTTGGAGATAAAGTATAAACTTGCTTCAATTTTGCGGGAGAAGGTTATTGATTCAGGTGGAATTAGGCAAAATCATTCCAGTCAAAGTGCATCTGCTAGTTTCCTGCCAAGAATGAGGTTTATGCAGCATCGTCGGGCTACTACAGCACCCTCCTTTACAGTTAAGAGGATGGCTGCTGATGGAGCCTGGATGCCTGCTGTTGGCAACGTTGCCACAGTAATGTGCTTTGCTATATGTCTAGTCCTGAATGTTAACCTTACTGGTGGCTCAAACCGCTCCATATTTTTCCTGGCTCCTATTCTGCTGCTGCTTAACCAAGATTCGGATTTTGTTGCTGGTTTTGGGGACAAACATAGATATTTTCCAGTGACTGTAATCATCTCGGCCTACTTTGTTATAACTGCCCTCTACAGCATATGGGAAGATGTTTGGCAAGGAAATAGTGGATGGGGTCTTCAAATCGGTGGGCCAGACTGGATTTTTGTGGTGAAGAATTTGGCCCTCCTCATTCTTACCTTCCCCAGTCATATACTTTTCAACAGGTACGTGTGGAGCCATACCAAGCAGAGTGACTCACCCCCGTGGATAACTTTGCCTCTTAATCTGCTTCCTATTGCATGTACAGATGTACTCAAGATTAAGATCTTGGGTATATTGGGAGTTATATATTCCCTGGCCCAATATCTAATTACTAGGCAACAATATATCTCTGGTCTAAAGTACATCTAA

Predicted protein sequences of Glyma18g53650

Limit To All Plant Sequences

>Glyma18g53650.1   sequence type=predicted peptide   gene model=Glyma18g53650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLQPRAFRPYIPISSSTSAPSFSSPNPNDSVTSPSLHGHANNATTSSRSLKNPTSFCHNYRIAIALVPSALFLLDLGGTTVVATLVVGLMISYILDSLNLKPAAFFAVWFSLIFSQLAFFLSASPSLFSAFNSSLAVAVLASFLCAHTTFLLGVWSSLNFKWLLLENPSIAVSLERLLFACLPISASALFAWASIAAVGITNAAYYLAAFNCCFYLLFSVPRVSSFKAKHEARYHGGEAPRDSFILGPLESCLHTLNLLFVPLLFHIASHYSLVLSSPASFCDLLLLFFVPFLFQLYASTRGALWWITTNPDQLHSIRVVNGAVALVFVVVALEVRVVFHSFGRYIQVPPPLNYVLVTLTMLGGASAAAAYAMGMVFDALSSVAFTTSAIVVSAAGAVVVGFPLLFLPLPAVAGFYLARFFEKKSLISYFAFVILGSLMVTWFVLHNFWDLNIWMAGMSLKSFCKLIIANSVLAMAIPGLALLPLKLNFLSEAGLISHALLLCYIENRFFNYSSIYYYGFEDEVMYPSYMVVMTTLLGLALVRRLSVDHRIGGKAVWILTCLFSSKLAMLFISSKSVVWVSAVLLLAVSPPLLLYRDRSKTTSRMKPWQGYAHACVVALSVWFCRETIFEALQWWNGRSPSDGLILGFCILLTGLACVPIVAIHFSHILSAKRCLVLVVATGLLFILMQPPLPVSLSYRSDLIKTARHSADDISIYGYIAGKPTWPSWLLIIAILLTLASVTSIIPIKYIVELRTFYSIAMGVALGIYIAAEYFLWAGILHVLIVVSMVCASVFVVFTHLPSATSTKLLPWVFALLVALFPVTYLLEGQLRIKNILEDSEIGNLGEEEKKLTTLLAIEGARTSLLGLYAAIFMLIALEIKYKLASILREKVIDSGGIRQNHSSQSASASFLPRMRFMQHRRATTAPSFTVKRMAADGAWMPAVGNVATVMCFAICLVLNVNLTGGSNRSIFFLAPILLLLNQDSDFVAGFGDKHRYFPVTVIISAYFVITALYSIWEDVWQGNSGWGLQIGGPDWIFVVKNLALLILTFPSHILFNRYVWSHTKQSDSPPWITLPLNLLPIACTDVLKIKILGILGVIYSLAQYLITRQQYISGLKYI*

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