Glyma18g53640 - SoyBase

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Report for Sequence Feature Glyma18g53640

Feature Type:	gene_model
Chromosome:	Gm18
Start:	61912408
stop:	61915389
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g53640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G44960	AT	Annotation by Michelle Graham. TAIR10: SNARE associated Golgi protein family \| chr1:16999576-17001447 FORWARD LENGTH=261	SoyBase	E_val: 5.00E-104	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
PTHR12677	Panther	UNCHARACTERIZED	JGI		ISS
PF09335	PFAM	SNARE associated Golgi protein	JGI		ISS
UniRef100_I1N5D9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5D9_SOYBN	SoyBase	E_val: 1.00E-168	ISS
UniRef100_Q9MAL1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F27F5.5 n=2 Tax=Arabidopsis thaliana RepID=Q9MAL1_ARATH	SoyBase	E_val: 3.00E-101	ISS

Expression Patterns of Glyma18g53640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g53640

Paralog	Evidence	Comments
Glyma08g47850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g53640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g298600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g53640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g53640

Limit To All Plant Sequences

>Glyma18g53640.2   sequence type=transcript   gene model=Glyma18g53640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATAACTTATGAAAATTACACTCAATAAATACACAAATCTGACATGTATCTTTAATCTTTAACATTACTAAATTATACAGTAACAATCCAATAGGGTTAACTCCAGTGGCGGTGTGTTGTGGTTGTTGGTTGGTTGGGTAACATAATCGCAGCGAAAATGGGGAGGGGTTGGTGGTGGAAAGTGGCGGTGTTGGGGGTGCTAGTGGCGGTGGTTTGGAGAGGGTGGCAGGGCGGTGGATTTGACAAGGAGGCAGCGTTCAGTTTTGTTCGAGAATGGTCGGAGAAGTTAGGGATTTGGGCGATCCCGCTCTACTTGTCGCTCCACACCGTCTCCATCGCTCTCTGTTTGCCCTCTGCGATCTTCTTCGAAACCACCGCCCCTCTCCTCTTCGGTTTCTTACCTTCCGTCTTCTGTGTCTTCTCCGCCAAAATCCTCGCTGCGTCACTCTCCTTCTCCATCGGCTGGTATTCAGGAGTTCAAGCTCAGCAATGGAGTGGGCCCAAAGAAACAAATACTTTCATTTAATCTCTAGAGGAGTTGAGCGAGATGGTTGGAAATTTGTTCTTCTTGCCCGCTTCTCACCTGTGCCCTCTTATGTTATTAACTATACCTTAGCGGCTACTGATGTTAGGTTCCTTTTGGATTTTCTTCTTCCTACTGCTATTGGATGTCTCCCCATGATTTTGCAAAATACATCTATTGGAAGCCTTGCTGGTGCTGCTGTTGCTACAGCCTCTGGCTCTAAGAAATCTCAAATTTGGTCCTACATTTTTCCCGTAGTTGGTATTTTGTCTAGTGTAGTTATTTCTTTGAGAATTAAAAAGTATTCAACCCAAGTTTCAGTATCTGAAATCGCCCCCAAGCAAAACTAACACTGATGATTCGTGACACACCTTATATGGTAGTGAAGAGCCGGGGGGTACCTTCGAAAAGGTCAAGAGTCATATTTTGCGGAGTTAGTATTATTAACACTATACACATATTACTATAAATGTTTTTGTTGTGACTTGATCACCGTGTTGTATGGTAGCTGTACTTCAGTTCAGTTATTTAAACTTTGGTTGGGATTTTTTTGTTCAATTTATATTTGAAACCTTTTTCACTAGATAAAGTAGTGGAACGTGCGCATTA

Coding sequences of Glyma18g53640

Limit To All Plant Sequences

>Glyma18g53640.1   sequence type=CDS   gene model=Glyma18g53640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGGGGTTGGTGGTGGAAAGTGGCGGTGTTGGGGGTGCTAGTGGCGGTGGTTTGGAGAGGGTGGCAGGGCGGTGGATTTGACAAGGAGGCAGCGTTCAGTTTTGTTCGAGAATGGTCGGAGAAGTTAGGGATTTGGGCGATCCCGCTCTACTTGTCGCTCCACACCGTCTCCATCGCTCTCTGTTTGCCCTCTGCGATCTTCTTCGAAACCACCGCCCCTCTCCTCTTCGGTTTCTTACCTTCCGTCTTCTGTGTCTTCTCCGCCAAAATCCTCGCTGCGTCACTCTCCTTCTCCATCGGCAGGCTGGTATTCAGGAGTTCAAGCTCAGCAATGGAGTGGGCCCAAAGAAACAAATACTTTCATTTAATCTCTAGAGGAGTTGAGCGAGATGGTTGGAAATTTGTTCTTCTTGCCCGCTTCTCACCTGTGCCCTCTTATGTTATTAACTATACCTTAGCGGCTACTGATGTTAGGTTCCTTTTGGATTTTCTTCTTCCTACTGCTATTGGATGTCTCCCCATGATTTTGCAAAATACATCTATTGGAAGCCTTGCTGGTGCTGCTGTTGCTACAGCCTCTGGCTCTAAGAAATCTCAAATTTGGTCCTACATTTTTCCCGTAGTTGGTATTTTGTCTAGTGTAGTTATTTCTTTGAGAATTAAAAAGTATTCAACCCAAGTTTCAGTATCTGAAATCGCCCCCAAGCAAAACTAA

>Glyma18g53640.2   sequence type=CDS   gene model=Glyma18g53640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCGGAGAAGTTAGGGATTTGGGCGATCCCGCTCTACTTGTCGCTCCACACCGTCTCCATCGCTCTCTGTTTGCCCTCTGCGATCTTCTTCGAAACCACCGCCCCTCTCCTCTTCGGTTTCTTACCTTCCGTCTTCTGTGTCTTCTCCGCCAAAATCCTCGCTGCGTCACTCTCCTTCTCCATCGGCTGGTATTCAGGAGTTCAAGCTCAGCAATGGAGTGGGCCCAAAGAAACAAATACTTTCATTTAATCTCTAGAGGAGTTGAGCGAGATGGTTGGAAATTTGTTCTTCTTGCCCGCTTCTCACCTGTGCCCTCTTATGTTATTAACTATACCTTAGCGGCTACTGATGTTAGGTTCCTTTTGGATTTTCTTCTTCCTACTGCTATTGGATGTCTCCCCATGATTTTGCAAAATACATCTATTGGAAGCCTTGCTGGTGCTGCTGTTGCTACAGCCTCTGGCTCTAAGAAATCTCAAATTTGGTCCTACATTTTTCCCGTAGTTGGTATTTTGTCTAGTGTAGTTATTTCTTTGAGAATTAAAAAGTATTCAACCCAAGTTTCAGTATCTGAAATCGCCCCCAAGCAAAACTAA

Predicted protein sequences of Glyma18g53640

Limit To All Plant Sequences

>Glyma18g53640.1   sequence type=predicted peptide   gene model=Glyma18g53640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRGWWWKVAVLGVLVAVVWRGWQGGGFDKEAAFSFVREWSEKLGIWAIPLYLSLHTVSIALCLPSAIFFETTAPLLFGFLPSVFCVFSAKILAASLSFSIGRLVFRSSSSAMEWAQRNKYFHLISRGVERDGWKFVLLARFSPVPSYVINYTLAATDVRFLLDFLLPTAIGCLPMILQNTSIGSLAGAAVATASGSKKSQIWSYIFPVVGILSSVVISLRIKKYSTQVSVSEIAPKQN*

>Glyma18g53640.2   sequence type=predicted peptide   gene model=Glyma18g53640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGEVRDLGDPALLVAPHRLHRSLFALCDLLRNHRPSPLRFLTFRLLCLLRQNPRCVTLLLHRLVFRSSSSAMEWAQRNKYFHLISRGVERDGWKFVLLARFSPVPSYVINYTLAATDVRFLLDFLLPTAIGCLPMILQNTSIGSLAGAAVATASGSKKSQIWSYIFPVVGILSSVVISLRIKKYSTQVSVSEIAPKQN*

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