Glyma18g53580 - SoyBase

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Report for Sequence Feature Glyma18g53580

Feature Type:	gene_model
Chromosome:	Gm18
Start:	61862303
stop:	61863325
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g53580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G16080	AT	Annotation by Michelle Graham. TAIR10: carboxyesterase 17 \| chr5:5252533-5253567 REVERSE LENGTH=344	SoyBase	E_val: 2.00E-120	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG1515	KOG	Arylacetamide deacetylase	JGI		ISS
PTHR23024	Panther	MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES	JGI		ISS
PTHR23024:SF10	Panther	CARBOXYLESTERASE-RELATED	JGI		ISS
PF07859	PFAM	alpha/beta hydrolase fold	JGI		ISS
UniRef100_B9RSL2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lipase, putative n=1 Tax=Ricinus communis RepID=B9RSL2_RICCO	SoyBase	E_val: 2.00E-165	ISS
UniRef100_I1N5D4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5D4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g53580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g53580

Paralog	Evidence	Comments
Glyma08g47930	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g53580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g298000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g53580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g53580

Limit To All Plant Sequences

>Glyma18g53580.1   sequence type=CDS   gene model=Glyma18g53580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCATTTCACTCAGGCATAACCCTCAAGTAAACAACACTAACCAGCAACGTGAAATCATCGCTGAAGAAATCCAAGGACTCATAAGAGTCCACAGAGATGGACGTGTAGAAAGGCCACCGATTGTGCCTAGTGTCTCCTGCACAGTGCCATCAGAACGTGGTGTCACTGCCAAAGATGTTATGATCAACAAAGAGACCAACTTGTGGGCACGAGTTTATATGCCAATAAGTTGCCACCACTCAAAGCTTCTTCTTCCTTTGCTTGTTTACTTCCACGGTGGTGGATTCTGCGTTGGTTCTGCTGCTTGGAGCTGTTACCACGAGTTCTTGACCAACCTTGCTTCCAAAGCAAACTGTGTCATTCTCTCTGTGGATTACCACTTAGCCCCTGAGAACCGTCTTCCAATGGCATATGATGATGGTTCCAATGCTCTCATGTGGGTGAAAAGAGAAGCACTGAATGGCTTTAGTGTCCAAAAGTGGTGGCTGAGTCATTGCAACATGTCTTCCCTTTTCCTAGCTGGTGATAGTGCAGGTGCCAACATAGCCTACAATGTGGCCACACGCATGGGATCAACATCAAACACACCATTATCTCTTAAGGGTGTTATATTGATCCAACCTTTCTTTGGAGGAGAAGATATAACTTTCTCTGAGAAACATTCCCTTCAGCCACCCAATTCAGCACTCACTTTATCCGTTTCTGACACTTATTGGCGCTTGGCACTCCCTCTTGGGGCCACACTTGACCACCCTTATTGCAACCCTCTTGCACATGGCACGGTCAAGTTGAGAGATTTGAGGCTTCCATCCACTATGGTGTGTGTTTCAGAAATGGATATACTTAGAGATAGGAACTTGGAGTTCTCAAACGCTTTGGCCAAAGCAGGGAAAAGGGTTGAAACAGTTGTTTACAAAGGCGTTGGCCATGCATTCCAAGTGCTGCATAATTATCAGCTTTCCCATTCCCGAACCCAAGAAATGATGTCTCATGTCAGCAACTTTCTTAACAAATGA

Predicted protein sequences of Glyma18g53580

Limit To All Plant Sequences

>Glyma18g53580.1   sequence type=predicted peptide   gene model=Glyma18g53580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAISLRHNPQVNNTNQQREIIAEEIQGLIRVHRDGRVERPPIVPSVSCTVPSERGVTAKDVMINKETNLWARVYMPISCHHSKLLLPLLVYFHGGGFCVGSAAWSCYHEFLTNLASKANCVILSVDYHLAPENRLPMAYDDGSNALMWVKREALNGFSVQKWWLSHCNMSSLFLAGDSAGANIAYNVATRMGSTSNTPLSLKGVILIQPFFGGEDITFSEKHSLQPPNSALTLSVSDTYWRLALPLGATLDHPYCNPLAHGTVKLRDLRLPSTMVCVSEMDILRDRNLEFSNALAKAGKRVETVVYKGVGHAFQVLHNYQLSHSRTQEMMSHVSNFLNK*

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