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Report for Sequence Feature Glyma18g53510

Feature Type:gene_model
Chromosome:Gm18
Start:61801546
stop:61808171
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g53510
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G02280AT Annotation by Michelle Graham. TAIR10: Flavodoxin family protein | chr3:453646-457659 FORWARD LENGTH=623 SoyBaseE_val: 0ISS
GO:0000085GO-bp Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle SoyBaseN/AISS
GO:0000724GO-bp Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0010212GO-bp Annotation by Michelle Graham. GO Biological Process: response to ionizing radiation SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0016571GO-bp Annotation by Michelle Graham. GO Biological Process: histone methylation SoyBaseN/AISS
GO:0016579GO-bp Annotation by Michelle Graham. GO Biological Process: protein deubiquitination SoyBaseN/AISS
GO:0043687GO-bp Annotation by Michelle Graham. GO Biological Process: post-translational protein modification SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005506GO-mf Annotation by Michelle Graham. GO Molecular Function: iron ion binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0010181GO-mf Annotation by Michelle Graham. GO Molecular Function: FMN binding SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0016651GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on NAD(P)H SoyBaseN/AISS
KOG1159 KOG NADP-dependent flavoprotein reductase JGI ISS
PTHR19384Panther NADPH FLAVIN OXIDOREDUCTASE JGI ISS
PTHR19384:SF10Panther OXIDOREDUCTASE JGI ISS
PF00175PFAM Oxidoreductase NAD-binding domain JGI ISS
PF00258PFAM Flavodoxin JGI ISS
PF00667PFAM FAD binding domain JGI ISS
UniRef100_B9H2Y5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nadph-cytochrome P450 oxydoreductase n=1 Tax=Populus trichocarpa RepID=B9H2Y5_POPTR SoyBaseE_val: 0ISS
UniRef100_UPI000233F415UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F415 related cluster n=1 Tax=unknown RepID=UPI000233F415 SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g53510
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g53510
ParalogEvidenceComments
Glyma08g47951 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g53510 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g297800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g53510
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g53510
>Glyma18g53510.1   sequence type=CDS   gene model=Glyma18g53510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGGCATGCGTAAACTGCTCATACTTTATGCCTCTCAGACCGGCAATGCATTGGACGCAGCTGAACGACTTTCTCGCGAAGCTGAACGGAGAGCCTGCCCCTTCAACCTTCTCTCTGTAGACCAATATGATCCTAGTTTGTTACCACAGGAGGAGGCTGTCATTTTTGTGGTTTCTACCACTGGCCAAGGTGATACACCCGATTCCATGAAGGTATTTTGGAGATATCTTCTTCAGAGAAACCTAGGTCAGCGTTGGCTGAGTGGGGTTCTCTATGCGGTTTTCGGCTTGGGTGATTCTAGTTATCAGAAGTACAATTTTGTTGCAAAGAAGCTAGACAAAAGATTAATGGACCTCGGAGGAACAACTATTGTAGAAAGAGGCTTGGGAGATGATCAACACCCTTCAGGCTACGAAGCTTCTCTGGATCCATGGCTGTCTTCTTTGTGGAGAATGTTAAACATGGTTAAACCAGAATTCTTACCAAATGGTCCTGATGTTGTGATTCAAGATACAGTATTGATTGATCAACCCAAAGTCCGGATCACATATCACAACATTGCAAATGACGAGTCACATTTTTCTAGTGCCTCGGATTTAACATGTCTTAATATGCAAATTGGGAGCGCTCGATCAATGCACCCTGGAAAATCATCTTCCGACAGAAGTAGGCCTGGTTGCTTTCTTAAGATGGTAAAGAATCTTCCTTTGACCAGATCAAACTGTGGAAAAGATGTTCGTCATTTTGAATTTGAATTTGTTTCACATGTTCTTAAATATGAGACTGGTGATGTCCTTGAAGTTCTACCTGGTCAAGATTCTGCTGCAGTTGATGCTTTCATACGACGTTGTAATTTGGATCCTGATTCATTCATCACTGTTAGTCTAAGAGAAATGGATGATCACAATACACATGACTCTAGAATCCCTGTAAAATTAAGAACTTTTGTGGAATTTTCAATGGATGTAGCTTCAGCTTCCCCACGGCGCTATTTATTTGAGGTTATGAGTTTCTTTGCAACAGCAGAACATGAGAGAGAGAGACTTAAATATTTTGCTTCACCTGAAGGAAGGGATGACCTGTACCAATATAACCAGAAAGAAAGAAGAACTGTTCTTGAGGTGTTAGAGGATTTTCCTTCTGTACAAATGCCATTTGAGTGGTTAGTCCAATTGGTTCCACCTCTGAAACCTAGAGCATTCTCCATATCTTCTTCTCAATCAGCTCACCCCAATCAAGTACACTTGACTGTGAATGTGGTGTCTTGGACAACACCTTACAAGAGGAAAAAAAAAGGACTATGCTCGTCGTGGCTAGCTGCATTAGATCCCTGTGATGGTATCCATGTTCCAACCTGGTTCCATAAAGGTTTACTTCCGACACCATCACCGTCACTCCCCCTCATACTTGTTGGACCTGGAACAGGATGTGCACCTTTTCGTGGATTTATAGAGGAAAGAGCAGTGCAAAGTAGAACTAATTCCACTGCTCCAATTATTTTTTTCTTTGGTTGTTGGAATGAAGACGGTGACTTTCTGTATCGTGATTTTTGGTTGAGTCATTCACAGAACAAAGGGGTGCTTTCAGAAGCAAAGGGTGGCGGTTTCTATGTTGCTTTCTCTAGAGACCAGCCGCAGAAGGTTTATGTTCAACATAAGATGAGGGAGCAGAGCCAAAGGATCTGGAACCTATTAGCTGAGGGGGCTGCAGTTTATATAGCAGGTTCTTCAACTAAAATGCCTGCAGATGTAACATCAGCTTTTGAGGAAATTGTATCCTACGAAAATGAGGTTTCAGCAGAAGATGCAGTTAGGTGGATTAGAGCATTAGAAAAGTGTGGTAAATTTCATATTGAGGCATGGTCTTAG
Predicted protein sequences of Glyma18g53510
>Glyma18g53510.1   sequence type=predicted peptide   gene model=Glyma18g53510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKGMRKLLILYASQTGNALDAAERLSREAERRACPFNLLSVDQYDPSLLPQEEAVIFVVSTTGQGDTPDSMKVFWRYLLQRNLGQRWLSGVLYAVFGLGDSSYQKYNFVAKKLDKRLMDLGGTTIVERGLGDDQHPSGYEASLDPWLSSLWRMLNMVKPEFLPNGPDVVIQDTVLIDQPKVRITYHNIANDESHFSSASDLTCLNMQIGSARSMHPGKSSSDRSRPGCFLKMVKNLPLTRSNCGKDVRHFEFEFVSHVLKYETGDVLEVLPGQDSAAVDAFIRRCNLDPDSFITVSLREMDDHNTHDSRIPVKLRTFVEFSMDVASASPRRYLFEVMSFFATAEHERERLKYFASPEGRDDLYQYNQKERRTVLEVLEDFPSVQMPFEWLVQLVPPLKPRAFSISSSQSAHPNQVHLTVNVVSWTTPYKRKKKGLCSSWLAALDPCDGIHVPTWFHKGLLPTPSPSLPLILVGPGTGCAPFRGFIEERAVQSRTNSTAPIIFFFGCWNEDGDFLYRDFWLSHSQNKGVLSEAKGGGFYVAFSRDQPQKVYVQHKMREQSQRIWNLLAEGAAVYIAGSSTKMPADVTSAFEEIVSYENEVSAEDAVRWIRALEKCGKFHIEAWS*






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