Glyma18g53500 - SoyBase

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Report for Sequence Feature Glyma18g53500

Feature Type:	gene_model
Chromosome:	Gm18
Start:	61797737
stop:	61801209
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g53500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G49210	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr5:19950093-19951464 FORWARD LENGTH=195	SoyBase	E_val: 6.00E-52	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1N5C9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5C9_SOYBN	SoyBase	E_val: 3.00E-117	ISS
UniRef100_Q945P2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT5g49210/K21P3_8 n=1 Tax=Arabidopsis thaliana RepID=Q945P2_ARATH	SoyBase	E_val: 3.00E-49	ISS

Expression Patterns of Glyma18g53500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g53500

Paralog	Evidence	Comments
Glyma08g47960	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g53500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g297700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g53500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g53500

Limit To All Plant Sequences

>Glyma18g53500.3   sequence type=transcript   gene model=Glyma18g53500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATTCCATTGATTTTGATATGAATTAATACAATTACTCCATATGATAATTTGTAATTGAATTGCAAAAGTTCTCTTCTTAGTTCTTACCATGTATGGCTATGTTAGGATTAAAACTTGAAAAATATTTTTATAAATTCCAATGCACAATAACAAATTTTAATGCACTAAATAACAAGAAAAAATTATCACCTTCGGAATAAAAGTATTTTTGGGCTCTCTCAACTTCAATCCAATTATTACAAATTACAAAATAAAATCCAAGTAATTTATTTTTGTATGCCGTTTGATTTGCAGTGCCTCTTATAAAAGGAAGAGGCTCTGTGTGAGTGGTTAGTGTTGGAGAAGAGAAAGAAGTGAATCGTAGGATCTGTTATTCTGTTAGCATGTTCCGTTCATCGTTCCGCCGCGCGTTTTCGGCGAGGGCGTCGAAGCACTGCGAGAACCACGAGTTCCTCTCTCGGAACTCGTTCCTGGGGAGCTGGGAGGCGCCACGGGACCCGAAGGAGGCGGAGGCGAAGCTGGCGCGGCTGCGAAGGGAATACGCGAAGCAAGTGAAGGAGGTTCGGAAGGAATACATAAGAGAGATGGAAGCGATGAAGATTGAGAAGGAGCGCAAAGACGAGGCTCACAGGGAAGCCCTCAGAGTCGCCAACGAAGAGCGCAAGAAGCTCAAGGCTCAAGCCGCGCAGCTTAGAGCACAGGAACGCGACATCGAACGACAACAGTTTCGAGAAACCCTATTAAAAGAAAGAGCAGAGAAACTTGAAAACTGGAGGATGAAAGTCAAAATGCTTGAAGGGAAGAAGGCTGAGAAGAAAGAGTTTCTGCGCCGACAAAGTTCGGCGTGGATTGAAGAAGGCAATCTTGAGAAAAAAGTTGTGGAAGCTATGGCTGAAATAATGCATCTTTGAGCTCCTTGCAGTTCTACATTTGTATTGGTTGAGGTCTGTGTTATCTGAAGAACAGGGTGCTTTCAGAGGCAAAGGGTGGGAGTGGAGGTTTGTATGTTGCTTTCTCGAGAGACCAGCACCAGAAGGTTTATGTTCAGCATAGACTATAGGGGGCTGCTGTTTATATAGCACCAAAATGTCTGCCGATGTAAGAAAATGATGCGTATGCACTTAAGCCAACGGAGACGGGATTTATAAAAATTGTACAATAATAATGTCATATCATTCTCATCGTAATTGATATCATGGGACTAAAAGTTATCTAAAGTTTACTGTCAAATTACATTATATACGGTATGATTTAAATTTTAAAATTGATATCACTTGTATATTTAAGTATAATTATGTATAGTTAACCAACAACACCACTAATGATTTATGTCTCTTAATCAAGTAATTTATGATTTGAAACTTGATTGAACTTTTGGCATGAAATAAATAGTGTTGGAAGGGGGACAACTTTG

>Glyma18g53500.4   sequence type=transcript   gene model=Glyma18g53500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATTTCTTCAGTGCAACGTTTCGTTTTACAACTCTTTCAATTGTCTTGTGTTGCCCTCATTCTGTTTGTTGAAATGCTCCCCTCTCTCTCTCAATTGAGACTTATTCATTTCGTGTTCTCTGCGAATTAGCATGTTCCGTTCATCGTTCCGCCGCGCGTTTTCGGCGAGGGCGTCGAAGCACTGCGAGAACCACGAGTTCCTCTCTCGGAACTCGTTCCTGGGGAGCTGGGAGGCGCCACGGGACCCGAAGGAGGCGGAGGCGAAGCTGGCGCGGCTGCGAAGGGAATACGCGAAGCAAGTGAAGGAGGTTCGGAAGGAATACATAAGAGAGATGGAAGCGATGAAGATTGAGAAGGAGCGCAAAGACGAGGCTCACAGGGAAGCCCTCAGAGTCGCCAACGAAGAGCGCAAGAAGCTCAAGGCTCAAGCCGCGCAGCTTAGAGCACAGGAACGCGACATCGAACGACAACAGTTTCGAGAAACCCTATTAAAAGAAAGAGCAGAGAAACTTGAAAACTGGAGGATGAAAGTCAAAATGCTTGAAGGGAAGAAGGCTGAGAAGAAAGAGTTTCTGCGCCGACAAAGTTCGGCGTGGATTGAAGAAGGCAATCTTGAGAAAAAAGTTGTGGAAGCTATGGCTGAAATAATGCATCTTTGAGCTCCTTGCAGTTCTACATTTGTATTGGTTGAGGTCTGTGTTATCTGAAGAACAGGGTGCTTTCAGAGGCAAAGGGTGGGAGTGGAGGTTTGTATGTTGCTTTCTCGAGAGACCAGCACCAGAAGGTTTATGTTCAGCATAGACTATAGGGGGCTGCTGTTTATATAGCACCAAAATGTCTGCCGATGTAAGAAAATGATGCGTATGCACTTAAGCCAACGGAGACGGGATTTATAAAAATTGTACAATAATAATGTCATATCATTCTCATCGTAATTGATATCATGGGACTAAAAGTTATCTAAAGTTTACTGTCAAATTACATTATATACGGTATGATTTAAATTTTAAAATTGATATCACTTGTATATTTAAGTATAATTATGTATAGTTAACCAACAACACCACTAATGATTTATGTCTCTTAATCAAGTAATTTATGATTTGAAACTTGATTGAACTTTTGGCATGAAATAAATAGTGTTGGAAGGGGGACAACTTTG

>Glyma18g53500.5   sequence type=transcript   gene model=Glyma18g53500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATTTCTTCAGTGCAACGTTTCGTTTTACAACTCTTTCAATTGTCTTGTGTTGCCCTCATTCTGTTTGTTGAAATGCTCCCCTCTCTCTCTCAATTGAGACTTATTCATTTCGTGTTCTCTGCGAATTAGCATGTTCCGTTCATCGTTCCGCCGCGCGTTTTCGGCGAGGGCGTCGAAGCACTGCGAGAACCACGAGTTCCTCTCTCGGAACTCGTTCCTGGGGAGCTGGGAGGCGCCACGGGACCCGAAGGAGGCGGAGGCGAAGCTGGCGCGGCTGCGAAGGGAATACGCGAAGCAAGTGAAGGAGGTTCGGAAGGAATACATAAGAGAGATGGAAGCGATGAAGATTGAGAAGGAGCGCAAAGACGAGGCTCACAGGGAAGCCCTCAGAGTCGCCAACGAAGAGCGCAAGAAGCTCAAGGCTCAAGCCGCGCAGCTTAGAGCACAGGAACGCGACATCGAACGACAACAGTTTCGAGAAACCCTATTAAAAGAAAGAGCAGAGAAACTTGAAAACTGGAGGATGAAAGTCAAAATGCTTGAAGGGAAGAAGGCTGAGAAGAAAGAGTTTCTGCGCCGACAAAGTTCGGCGTGGATTGAAGAAGGCAATCTTGAGAAAAAAGTTGTGGAAGCTATGGCTGAAATAATGCATCTTTGAGCTCCTTGCAGTTCTACATTTGTATTGGTTGAGAAGAACAGGGTGCTTTCAGAGGCAAAGGGTGGGAGTGGAGGTTTGTATGTTGCTTTCTCGAGAGACCAGCACCAGAAGGTTTATGTTCAGCATAGACTATAGGGGGCTGCTGTTTATATAGCACCAAAATGTCTGCCGATGTAAGAAAATGATGCGTATGCACTTAAGCCAACGGAGACGGGATTTATAAAAATTGTACAATAATAATGTCATATCATTCTCATCGTAATTGATATCATGGGACTAAAAGTTATCTAAAGTTTACTGTCAAATTACATTATATACGGTATGATTTAAATTTTAAAATTGATATCACTTGTATATTTAAGTATAATTATGTATAGTTAACCAACAACACCACTAATGATTTATGTCTCTTAATCAAGTAATTTATGATTTGAAACTTGATTGAACTTTTGGCATGAAATAAATAGTGTTGGAAGGGGGACAACTTTG

>Glyma18g53500.6   sequence type=transcript   gene model=Glyma18g53500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATTCCATTGATTTTGATATGAATTAATACAATTACTCCATATGATAATTTGTAATTGAATTGCAAAAGTTCTCTTCTTAGTTCTTACCATGTATGGCTATGTTAGGATTAAAACTTGAAAAATATTTTTATAAATTCCAATGCACAATAACAAATTTTAATGCACTAAATAACAAGAAAAAATTATCACCTTCGGAATAAAAGTATTTTTGGGCTCTCTCAACTTCAATCCAATTATTACAAATTACAAAATAAAATCCAAGTAATTTATTTTTGTATGCCGTTTGATTTGCAGTGCCTCTTATAAAAGGAAGAGGCTCTGTGTGAGTGGTTAGTGTTGGAGAAGAGAAAGAAGTGAATCGTAGGATCTGTTATTCTGTTAGCATGTTCCGTTCATCGTTCCGCCGCGCGTTTTCGGCGAGGGCGTCGAAGCACTGCGAGAACCACGAGTTCCTCTCTCGGAACTCGTTCCTGGGGAGCTGGGAGGCGCCACGGGACCCGAAGGAGGCGGAGGCGAAGCTGGCGCGGCTGCGAAGGGAATACGCGAAGCAAGTGAAGGAGGTTCGGAAGGAATACATAAGAGAGATGGAAGCGATGAAGATTGAGAAGGAGCGCAAAGACGAGGCTCACAGGGAAGCCCTCAGAGTCGCCAACGAAGAGCGCAAGAAGCTCAAGGCTCAAGCCGCGCAGCTTAGAGCACAGGAACGCGACATCGAACGACAACAGTTTCGAGAAACCCTATTAAAAGAAAGAGCAGAGAAACTTGAAAACTGGAGGATGAAAGTCAAAATGCTTGAAGGGAAGAAGGCTGAGAAGAAAGAGTTTCTGCGCCGACAAAGTTCGGCGTGGATTGAAGAAGGCAATCTTGAGAAAAAAGTTGTGGAAGCTATGGCTGAAATAATGCATCTTTGAGCTCCTTGCAGTTCTACATTTGTATTGGTTGAGAAGAACAGGGTGCTTTCAGAGGCAAAGGGTGGGAGTGGAGGTTTGTATGTTGCTTTCTCGAGAGACCAGCACCAGAAGGTTTATGTTCAGCATAGACTATAGGGGGCTGCTGTTTATATAGCACCAAAATGTCTGCCGATGTAAGAAAATGATGCGTATGCACTTAAGCCAACGGAGACGGGATTTATAAAAATTGTACAATAATAATGTCATATCATTCTCATCGTAATTGATATCATGGGACTAAAAGTTATCTAAAGTTTACTGTCAAATTACATTATATACGGTATGATTTAAATTTTAAAATTGATATCACTTGTATATTTAAGTATAATTATGTATAGTTAACCAACAACACCACTAATGATTTATGTCTCTTAATCAAGTAATTTATGATTTGAAACTTGATTGAACTTTTGGCATGAAATAAATAGTGTTGGAAGGGGGACAACTTTG

Coding sequences of Glyma18g53500

Limit To All Plant Sequences

>Glyma18g53500.2   sequence type=CDS   gene model=Glyma18g53500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCCGTTCATCGTTCCGCCGCGCGTTTTCGGCGAGGGCGTCGAAGCACTGCGAGAACCACGAGTTCCTCTCTCGGAACTCGTTCCTGGGGAGCTGGGAGGCGCCACGGGACCCGAAGGAGGCGGAGGCGAAGCTGGCGCGGCTGCGAAGGGAATACGCGAAGCAAGTGAAGGAGGTTCGGAAGGAATACATAAGAGAGATGGAAGCGATGAAGATTGAGAAGGAGCGCAAAGACGAGGCTCACAGGGAAGCCCTCAGAGTCGCCAACGAAGAGCGCAAGAAGCTCAAGGCTCAAGCCGCGCAGCTTAGAGCACAGGAACGCGACATCGAACGACAACAGTTTCGAGAAACCCTATTAAAAGAAAGAGCAGAGAAACTTGAAAACTGGAGGATGAAAGTCAAAATGCTTGAAGGGAAGAAGGCTGAGAAGAAAGAGTTTCTGCGCCGACAAAGTTCGGCGTGGATTGAAGAAGGCAATCTTGAGAAAAAAGTTGTGGAAGCTATGGCTGAAATAATGCATCTTTGA

>Glyma18g53500.3   sequence type=CDS   gene model=Glyma18g53500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCCGTTCATCGTTCCGCCGCGCGTTTTCGGCGAGGGCGTCGAAGCACTGCGAGAACCACGAGTTCCTCTCTCGGAACTCGTTCCTGGGGAGCTGGGAGGCGCCACGGGACCCGAAGGAGGCGGAGGCGAAGCTGGCGCGGCTGCGAAGGGAATACGCGAAGCAAGTGAAGGAGGTTCGGAAGGAATACATAAGAGAGATGGAAGCGATGAAGATTGAGAAGGAGCGCAAAGACGAGGCTCACAGGGAAGCCCTCAGAGTCGCCAACGAAGAGCGCAAGAAGCTCAAGGCTCAAGCCGCGCAGCTTAGAGCACAGGAACGCGACATCGAACGACAACAGTTTCGAGAAACCCTATTAAAAGAAAGAGCAGAGAAACTTGAAAACTGGAGGATGAAAGTCAAAATGCTTGAAGGGAAGAAGGCTGAGAAGAAAGAGTTTCTGCGCCGACAAAGTTCGGCGTGGATTGAAGAAGGCAATCTTGAGAAAAAAGTTGTGGAAGCTATGGCTGAAATAATGCATCTTTGA

>Glyma18g53500.4   sequence type=CDS   gene model=Glyma18g53500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCCGTTCATCGTTCCGCCGCGCGTTTTCGGCGAGGGCGTCGAAGCACTGCGAGAACCACGAGTTCCTCTCTCGGAACTCGTTCCTGGGGAGCTGGGAGGCGCCACGGGACCCGAAGGAGGCGGAGGCGAAGCTGGCGCGGCTGCGAAGGGAATACGCGAAGCAAGTGAAGGAGGTTCGGAAGGAATACATAAGAGAGATGGAAGCGATGAAGATTGAGAAGGAGCGCAAAGACGAGGCTCACAGGGAAGCCCTCAGAGTCGCCAACGAAGAGCGCAAGAAGCTCAAGGCTCAAGCCGCGCAGCTTAGAGCACAGGAACGCGACATCGAACGACAACAGTTTCGAGAAACCCTATTAAAAGAAAGAGCAGAGAAACTTGAAAACTGGAGGATGAAAGTCAAAATGCTTGAAGGGAAGAAGGCTGAGAAGAAAGAGTTTCTGCGCCGACAAAGTTCGGCGTGGATTGAAGAAGGCAATCTTGAGAAAAAAGTTGTGGAAGCTATGGCTGAAATAATGCATCTTTGA

>Glyma18g53500.5   sequence type=CDS   gene model=Glyma18g53500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCCGTTCATCGTTCCGCCGCGCGTTTTCGGCGAGGGCGTCGAAGCACTGCGAGAACCACGAGTTCCTCTCTCGGAACTCGTTCCTGGGGAGCTGGGAGGCGCCACGGGACCCGAAGGAGGCGGAGGCGAAGCTGGCGCGGCTGCGAAGGGAATACGCGAAGCAAGTGAAGGAGGTTCGGAAGGAATACATAAGAGAGATGGAAGCGATGAAGATTGAGAAGGAGCGCAAAGACGAGGCTCACAGGGAAGCCCTCAGAGTCGCCAACGAAGAGCGCAAGAAGCTCAAGGCTCAAGCCGCGCAGCTTAGAGCACAGGAACGCGACATCGAACGACAACAGTTTCGAGAAACCCTATTAAAAGAAAGAGCAGAGAAACTTGAAAACTGGAGGATGAAAGTCAAAATGCTTGAAGGGAAGAAGGCTGAGAAGAAAGAGTTTCTGCGCCGACAAAGTTCGGCGTGGATTGAAGAAGGCAATCTTGAGAAAAAAGTTGTGGAAGCTATGGCTGAAATAATGCATCTTTGA

>Glyma18g53500.6   sequence type=CDS   gene model=Glyma18g53500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCCGTTCATCGTTCCGCCGCGCGTTTTCGGCGAGGGCGTCGAAGCACTGCGAGAACCACGAGTTCCTCTCTCGGAACTCGTTCCTGGGGAGCTGGGAGGCGCCACGGGACCCGAAGGAGGCGGAGGCGAAGCTGGCGCGGCTGCGAAGGGAATACGCGAAGCAAGTGAAGGAGGTTCGGAAGGAATACATAAGAGAGATGGAAGCGATGAAGATTGAGAAGGAGCGCAAAGACGAGGCTCACAGGGAAGCCCTCAGAGTCGCCAACGAAGAGCGCAAGAAGCTCAAGGCTCAAGCCGCGCAGCTTAGAGCACAGGAACGCGACATCGAACGACAACAGTTTCGAGAAACCCTATTAAAAGAAAGAGCAGAGAAACTTGAAAACTGGAGGATGAAAGTCAAAATGCTTGAAGGGAAGAAGGCTGAGAAGAAAGAGTTTCTGCGCCGACAAAGTTCGGCGTGGATTGAAGAAGGCAATCTTGAGAAAAAAGTTGTGGAAGCTATGGCTGAAATAATGCATCTTTGA

Predicted protein sequences of Glyma18g53500

Limit To All Plant Sequences

>Glyma18g53500.2   sequence type=predicted peptide   gene model=Glyma18g53500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFRSSFRRAFSARASKHCENHEFLSRNSFLGSWEAPRDPKEAEAKLARLRREYAKQVKEVRKEYIREMEAMKIEKERKDEAHREALRVANEERKKLKAQAAQLRAQERDIERQQFRETLLKERAEKLENWRMKVKMLEGKKAEKKEFLRRQSSAWIEEGNLEKKVVEAMAEIMHL*

>Glyma18g53500.3   sequence type=predicted peptide   gene model=Glyma18g53500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFRSSFRRAFSARASKHCENHEFLSRNSFLGSWEAPRDPKEAEAKLARLRREYAKQVKEVRKEYIREMEAMKIEKERKDEAHREALRVANEERKKLKAQAAQLRAQERDIERQQFRETLLKERAEKLENWRMKVKMLEGKKAEKKEFLRRQSSAWIEEGNLEKKVVEAMAEIMHL*

>Glyma18g53500.4   sequence type=predicted peptide   gene model=Glyma18g53500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFRSSFRRAFSARASKHCENHEFLSRNSFLGSWEAPRDPKEAEAKLARLRREYAKQVKEVRKEYIREMEAMKIEKERKDEAHREALRVANEERKKLKAQAAQLRAQERDIERQQFRETLLKERAEKLENWRMKVKMLEGKKAEKKEFLRRQSSAWIEEGNLEKKVVEAMAEIMHL*

>Glyma18g53500.5   sequence type=predicted peptide   gene model=Glyma18g53500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFRSSFRRAFSARASKHCENHEFLSRNSFLGSWEAPRDPKEAEAKLARLRREYAKQVKEVRKEYIREMEAMKIEKERKDEAHREALRVANEERKKLKAQAAQLRAQERDIERQQFRETLLKERAEKLENWRMKVKMLEGKKAEKKEFLRRQSSAWIEEGNLEKKVVEAMAEIMHL*

>Glyma18g53500.6   sequence type=predicted peptide   gene model=Glyma18g53500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFRSSFRRAFSARASKHCENHEFLSRNSFLGSWEAPRDPKEAEAKLARLRREYAKQVKEVRKEYIREMEAMKIEKERKDEAHREALRVANEERKKLKAQAAQLRAQERDIERQQFRETLLKERAEKLENWRMKVKMLEGKKAEKKEFLRRQSSAWIEEGNLEKKVVEAMAEIMHL*

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