Glyma18g53400 - SoyBase

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Report for Sequence Feature Glyma18g53400

Feature Type:	gene_model
Chromosome:	Gm18
Start:	61684381
stop:	61688090
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g53400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G67080	AT	Annotation by Michelle Graham. TAIR10: abscisic acid (aba)-deficient 4 \| chr1:25045405-25046681 REVERSE LENGTH=220	SoyBase	E_val: 1.00E-85	ISS
GO:0009688	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid biosynthetic process	SoyBase	N/A	ISS
GO:0010117	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoprotection	SoyBase	N/A	ISS
GO:0016122	GO-bp	Annotation by Michelle Graham. GO Biological Process: xanthophyll metabolic process	SoyBase	N/A	ISS
GO:0032928	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of superoxide anion generation	SoyBase	N/A	ISS
GO:0042744	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process	SoyBase	N/A	ISS
GO:0009517	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: PSII associated light-harvesting complex II	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
UniRef100_D7R521	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Neoxanthin synthase n=1 Tax=Citrus sinensis RepID=D7R521_CITSI	SoyBase	E_val: 2.00E-97	ISS
UniRef100_UPI000233F2AA	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F2AA related cluster n=1 Tax=unknown RepID=UPI000233F2AA	SoyBase	E_val: 4.00E-176	ISS

Expression Patterns of Glyma18g53400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g53400

Paralog	Evidence	Comments
Glyma08g48091	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g53400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g296600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g53400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g53400

Limit To All Plant Sequences

>Glyma18g53400.2   sequence type=transcript   gene model=Glyma18g53400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGTGTTGAGTGCTTTCATTTATACTATACATGTTAAAAAAAAAATCCATTTAAGGTTGTACTGCTAATTTCTGTTAGCTTTCACTGCCTTTACTTGTTTGGTTTGAGACTTTGAGTTGCTCTTTCCTTCCTTACATACAATTCCAACTATTTGAGTTTGAGTTCCTCACTTCTCTCCAATGCTCCGCTGAGTTGTTTTTTTCTCTTCTCCAGTGCCAATTTCGGTCACTCTTCATTCATACATGAAGAAGTGACCACTGTTGCTGAATCAGTTATTCCTTCAATCATGTATTTCTCTTCTTGCTTTTCCCATTCTCCATTGACACTCAAGGCTATGAAACCTTGTGGTTCTGTTGGGAAGGGGAAAAATTTTGCTTTCCCTATCAGAAGTAATGGTGCTGAGCTTTGTGACGGACACATTGTGAGAAGTAGAGTCAACTTAAGCGGAGATTGGAGTTTCATAGGAGGATCCAGAATTATTGTGAAACCAAAAGCTACAAGATTGCTTCTTCATTATCCAAAAAGGGGTCAAATGCAAGCTTCATGCTTCATAGGATCTCAACTCGCTAGCACTGTATTTACAGTAGGAACAATAGCAGTGCTCCCATTTTACACACTCATGGTTCTAGCTCCAAAATCTGAACTAACCAAGAAGTCCATGGAGAGTAGTATACCTTATGTAGTGCTTAGCATTCTATATGCATATTTATTGTACCTTTCTTGGACCCCTGAGACAGTTCGGTTGATTTTTGCAAGTAAATACTTGCTACCAGAGCTGGCTGGTATAGCAAAAATGTTCTCCAGTGAAATGACTTTGGCCTCTGCCTGGATTCACCTGTTGGTTGTTGATCTTTTTGCTGCAAGGTCATTCATTTTATCTTAATCTTGGTTTCTCATTCTTTAATTATTTTTTATGATAGTTATCATGGTTATGAATTCAGGCATATTTTCCAAGATGGACTGAAGAATCAGATTGAAACTCGGCATTCTGTTTCTTTTTGCTTGTTTTTTTGCCCCATTGGGATTCTTACTCATGTCATCACCAAATCCATGACCAAACCTGCCAGAAAGGAGGGTCATGGTTTATAGAAGAAATCTGCTTTCATTGAGGCAAACTAGGATTTCATTTCAAGTTTGAGAATTTGAGGAACTCATGTTTGAGTTGAAGTTACTTGTAAATGTTCAAGGGTACTTCATATCTGTCACAAGGTGCCCAAAGGGCAATTGAAATATATGGAAAAAAAAGGAGTAACTAACAATTTTATTATACATTGGAAACAATTAGGAAACTTAATTTTTAAAAACTGGAATTGGAAAATGAGTTTGAATTTATTACCCAA

Coding sequences of Glyma18g53400

Limit To All Plant Sequences

>Glyma18g53400.1   sequence type=CDS   gene model=Glyma18g53400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATTTCTCTTCTTGCTTTTCCCATTCTCCATTGACACTCAAGGCTATGAAACCTTGTGGTTCTGTTGGGAAGGGGAAAAATTTTGCTTTCCCTATCAGAAGTAATGGTGCTGAGCTTTGTGACGGACACATTGTGAGAAGTAGAGTCAACTTAAGCGGAGATTGGAGTTTCATAGGAGGATCCAGAATTATTGTGAAACCAAAAGCTACAAGATTGCTTCTTCATTATCCAAAAAGGGGTCAAATGCAAGCTTCATGCTTCATAGGATCTCAACTCGCTAGCACTGTATTTACAGTAGGAACAATAGCAGTGCTCCCATTTTACACACTCATGGTTCTAGCTCCAAAATCTGAACTAACCAAGAAGTCCATGGAGAGTAGTATACCTTATGTAGTGCTTAGCATTCTATATGCATATTTATTGTACCTTTCTTGGACCCCTGAGACAGTTCGGTTGATTTTTGCAAGTAAATACTTGCTACCAGAGCTGGCTGGTATAGCAAAAATGTTCTCCAGTGAAATGACTTTGGCCTCTGCCTGGATTCACCTGTTGGTTGTTGATCTTTTTGCTGCAAGGCATATTTTCCAAGATGGACTGAAGAATCAGATTGAAACTCGGCATTCTGTTTCTTTTTGCTTGTTTTTTTGCCCCATTGGGATTCTTACTCATGTCATCACCAAATCCATGACCAAACCTGCCAGAAAGGAGGGTCATGGTTTATAG

>Glyma18g53400.2   sequence type=CDS   gene model=Glyma18g53400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATTTCTCTTCTTGCTTTTCCCATTCTCCATTGACACTCAAGGCTATGAAACCTTGTGGTTCTGTTGGGAAGGGGAAAAATTTTGCTTTCCCTATCAGAAGTAATGGTGCTGAGCTTTGTGACGGACACATTGTGAGAAGTAGAGTCAACTTAAGCGGAGATTGGAGTTTCATAGGAGGATCCAGAATTATTGTGAAACCAAAAGCTACAAGATTGCTTCTTCATTATCCAAAAAGGGGTCAAATGCAAGCTTCATGCTTCATAGGATCTCAACTCGCTAGCACTGTATTTACAGTAGGAACAATAGCAGTGCTCCCATTTTACACACTCATGGTTCTAGCTCCAAAATCTGAACTAACCAAGAAGTCCATGGAGAGTAGTATACCTTATGTAGTGCTTAGCATTCTATATGCATATTTATTGTACCTTTCTTGGACCCCTGAGACAGTTCGGTTGATTTTTGCAAGTAAATACTTGCTACCAGAGCTGGCTGGTATAGCAAAAATGTTCTCCAGTGAAATGACTTTGGCCTCTGCCTGGATTCACCTGTTGGTTGTTGATCTTTTTGCTGCAAGGTCATTCATTTTATCTTAA

Predicted protein sequences of Glyma18g53400

Limit To All Plant Sequences

>Glyma18g53400.1   sequence type=predicted peptide   gene model=Glyma18g53400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYFSSCFSHSPLTLKAMKPCGSVGKGKNFAFPIRSNGAELCDGHIVRSRVNLSGDWSFIGGSRIIVKPKATRLLLHYPKRGQMQASCFIGSQLASTVFTVGTIAVLPFYTLMVLAPKSELTKKSMESSIPYVVLSILYAYLLYLSWTPETVRLIFASKYLLPELAGIAKMFSSEMTLASAWIHLLVVDLFAARHIFQDGLKNQIETRHSVSFCLFFCPIGILTHVITKSMTKPARKEGHGL*

>Glyma18g53400.2   sequence type=predicted peptide   gene model=Glyma18g53400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYFSSCFSHSPLTLKAMKPCGSVGKGKNFAFPIRSNGAELCDGHIVRSRVNLSGDWSFIGGSRIIVKPKATRLLLHYPKRGQMQASCFIGSQLASTVFTVGTIAVLPFYTLMVLAPKSELTKKSMESSIPYVVLSILYAYLLYLSWTPETVRLIFASKYLLPELAGIAKMFSSEMTLASAWIHLLVVDLFAARSFILS*

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