Glyma18g53370 - SoyBase

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Report for Sequence Feature Glyma18g53370

Feature Type:	gene_model
Chromosome:	Gm18
Start:	61672197
stop:	61676428
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g53370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02570	AT	Annotation by Michelle Graham. TAIR10: Mannose-6-phosphate isomerase, type I \| chr3:543463-545478 REVERSE LENGTH=432	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0010043	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to zinc ion	SoyBase	N/A	ISS
GO:0032025	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cobalt ion	SoyBase	N/A	ISS
GO:0033591	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to L-ascorbic acid	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004476	GO-mf	Annotation by Michelle Graham. GO Molecular Function: mannose-6-phosphate isomerase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG2757	KOG	Mannose-6-phosphate isomerase	JGI		ISS
PTHR10309	Panther	MANNOSE-6-PHOSPHATE ISOMERASE	JGI		ISS
PF01238	PFAM	Phosphomannose isomerase type I	JGI		ISS
UniRef100_I1N5B5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mannose-6-phosphate isomerase n=1 Tax=Glycine max RepID=I1N5B5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1N5B5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Mannose-6-phosphate isomerase n=1 Tax=Glycine max RepID=I1N5B5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g53370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g53370

Paralog	Evidence	Comments
Glyma08g48120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g53370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g296300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g53370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g53370

Limit To All Plant Sequences

>Glyma18g53370.1   sequence type=CDS   gene model=Glyma18g53370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGATGCCAATCTTCAGAGGCTCCATTGCTCCGTCAAAAACTACGATTGGGGTCTCCCAGGTCGCGTCTCCGAGGTTGCCAGACTCCACGCGCTCAATTCCGCGTCTGAATTCCACGCGGAGGACCCTTACGCCGAGCTTTGGATGGGTACCCATGATTCAGGCCCTTCCTTTTTAGCTTCCTCCAATGGAAATGAGAATGGTGTCTCCCTCAAGGCTTGGATTTCCGAGAACCCTGATGTGCTCGGTCACAAGGTTCTTCACAAATGGGGTTCTGATCTCCCTTTCTTGTTCAAGGTGCTGTCTGTGGGGAAGGCCTTGTCAATTCAAGCTCACCCGGATAAGGAGTTGGCAAGGACTCTGCATAAGTTGCACCCTGATTTGTATAAAGATGGCAATCACAAACCTGAGATGGCCCTTGCACTCACTAATTTTGAGGCTCTCTGTGGATTCATCACTCTCAAGGAGCTCAAGGGTGTGCTTCATACTGTTCCTGAAATTGTGGAACTGGTTGGTGCTACAAATACAAACCTGGTCTTACAAACTAATGATCAGGATGGTGAAGAGAAGGTCAAACCTGTTCTGCAGGCAGTGTTCACCGACCTCATGTCAGCTAGTAAAGATAGAGTAACGGATGCAGTAAACAGATTGAAAAGCCGTCTGCTTAAGGAGAGTGAGGTGAGGCAGTTGACAGATAAAGAGCAGCTGGTGCTGCGGTTGGAAAAACAATACCCAGCTGATGTTGGTGTCATAGCAGCCTTCTTTCTTAACCATGTAAAACTCAATCCTGGTGAAGCTTTGTTCCTCGGGGCAAATGAACCACATGCATATTTATCTGGGGAGTGTGTTGAATGCATGGCAACTTCTGACAATGTTGTGCGAGCTGGCCTAACTCCCAAACACAGAGATGTCCAGACCCTTTGCTCCATGCTCACATACAAACAGGGTTCTCCTGAAATCTTGCGTGGAGTATCTGTTAATCCATATGTAAATAAATATACTCCACCATTTGAGGAATTTGAGATTGATCGTTGCATTCTTCCTCAAGGGGAAACAGTGGTGTTCCCAGCAGTTCCAGGTCCTTCGATCTTTTTGGTCACAGTTGGTGAAGGAACAATGAATACAGGATTACCCAAAGGACATGTGGTCACCGAAGGTGATGTTCTTTTTGCCGCAGCTAACACTGAGATTAGTGTTACTAGTGCATCCGAGTTGAATTTGTACAGAACAGGGGTAAATAGCAAGTTTTTTCAAGCTTCATAA

Predicted protein sequences of Glyma18g53370

Limit To All Plant Sequences

>Glyma18g53370.1   sequence type=predicted peptide   gene model=Glyma18g53370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDANLQRLHCSVKNYDWGLPGRVSEVARLHALNSASEFHAEDPYAELWMGTHDSGPSFLASSNGNENGVSLKAWISENPDVLGHKVLHKWGSDLPFLFKVLSVGKALSIQAHPDKELARTLHKLHPDLYKDGNHKPEMALALTNFEALCGFITLKELKGVLHTVPEIVELVGATNTNLVLQTNDQDGEEKVKPVLQAVFTDLMSASKDRVTDAVNRLKSRLLKESEVRQLTDKEQLVLRLEKQYPADVGVIAAFFLNHVKLNPGEALFLGANEPHAYLSGECVECMATSDNVVRAGLTPKHRDVQTLCSMLTYKQGSPEILRGVSVNPYVNKYTPPFEEFEIDRCILPQGETVVFPAVPGPSIFLVTVGEGTMNTGLPKGHVVTEGDVLFAAANTEISVTSASELNLYRTGVNSKFFQAS*

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