Report for Sequence Feature Glyma18g53340
Feature Type: gene_model
Chromosome: Gm18
Start: 61602446
stop: 61604483
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g53340
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G67050 AT
Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38320.1); Has 617 Blast hits to 318 proteins in 80 species: Archae - 0; Bacteria - 16; Metazoa - 141; Fungi - 62; Plants - 128; Viruses - 2; Other Eukaryotes - 268 (source: NCBI BLink). | chr1:25028862-25029656 REVERSE LENGTH=264
SoyBase E_val: 7.00E-43 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009741 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_Q9FZH6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F1O19.11 protein n=2 Tax=Arabidopsis thaliana RepID=Q9FZH6_ARATH
SoyBase E_val: 3.00E-40 ISS
UniRef100_UPI000233DFBA UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233DFBA related cluster n=1 Tax=unknown RepID=UPI000233DFBA
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g53340
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g53340
Paralog Evidence Comments
Glyma08g48160 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g53340 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g295900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g53340
Coding sequences of Glyma18g53340
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g53340.2 sequence type=CDS gene model=Glyma18g53340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCGTTGATCTTTGCTCAGAAAATTGTGTGGTTGCTTCCTCTTCTTCTGTGAGTCCAAGAATCTCATTCTCACATGACTTCTCCCAATCTGATGTCATCCCTGTTGAGCAACTCCCTTTTAGATCAAACTCTTCTGGCTTGAATCCCACCATTGATTTTGATTTTTGTGTCAGTGAGAGCTTTGAGCTTGAGTCATCTTCAGCTGATGAACTTTTCTCACATGGGAGGATCCTTCCCACTGAGGTCAAGAGAAAGAACAATATTGTTCCACCTATGAAGCAATTAGCACCGAAGAGTAGTACTTCATTGCCTCCTCCTCCTTATGCTGGTCCCAACAGTGTCTCCACTGGTAGAAACTTGAAGAAAGAGATTACCCCCAAAGAAAGCAAGTGTTTAAATGATGAAGTGTACGATCAGAAGCAAAGTTCAAAGTCCTTTTGGAACTTTAAGAGAAGTAGTAGTTGTGGAAGTGGACCTAGAAGGAGTTTTTGTCCTTTGCCACTTCTATCTAGAAGCAATTCAACTGGATCATCAACACCAAGTGTTAAGAGGAATCCACTTTCAAAGGAGGGTGTTAACAACATTAAACAGAAACATTCTTCCACAAGGTTGGCTCATCACTCCTTTGTGCCAAACAGCTATCATCATCATCAAAAGCCTCCATTGAATTACAAGAGTCATCATGGATCTTATGGTACCAGTGTAAGAGTCAATCCTGTCCTGAATGTTCCTCCTGCAAACCTATTTGGTTTGGTTTCAATCTTCTCCAACAATAGAGACAAGAGCAAGAAGTAG
Predicted protein sequences of Glyma18g53340
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g53340.2 sequence type=predicted peptide gene model=Glyma18g53340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAVDLCSENCVVASSSSVSPRISFSHDFSQSDVIPVEQLPFRSNSSGLNPTIDFDFCVSESFELESSSADELFSHGRILPTEVKRKNNIVPPMKQLAPKSSTSLPPPPYAGPNSVSTGRNLKKEITPKESKCLNDEVYDQKQSSKSFWNFKRSSSCGSGPRRSFCPLPLLSRSNSTGSSTPSVKRNPLSKEGVNNIKQKHSSTRLAHHSFVPNSYHHHQKPPLNYKSHHGSYGTSVRVNPVLNVPPANLFGLVSIFSNNRDKSKK*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
