Report for Sequence Feature Glyma18g53320
Feature Type: gene_model
Chromosome: Gm18
Start: 61588054
stop: 61589029
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g53320
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G38300 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67035.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:15306022-15306813 FORWAR
SoyBase E_val: 7.00E-29 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1N5B0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N5B0_SOYBN
SoyBase E_val: 1.00E-160 ISS
Expression Patterns of Glyma18g53320
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g53320
Paralog Evidence Comments
Glyma08g48200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g53320 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g295700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g53320
Coding sequences of Glyma18g53320
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g53320.1 sequence type=CDS gene model=Glyma18g53320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACGCTCTTAATGAACCCAACACAACACAATCCCAACGTCTCTCTGCAACAACACTCAAACCCCACACTGGACACCATCTCTCTCATGAAGCAAGGCTTCCTCATGATGGAGGAGGACTTTGAGAGAGGACCAAGATACCATGCATACGCTGCGTTGAGGGAAACAAAGCTTCGCATGAAGTACACGAGACAACAAGAATACGAACAAGAAGAAGAAAAAGAGGGTGTTGTTGAAGCAAAGGTCTTAACTTTAACCCCACCAAGAAAAAAACAAGTCAAGTTTCAAGATGGTGGTACTGGTGTGGTTTCTGGGAGAAAAGGGTCATCATATTCATCCTCATCTTCTCTTGTGGCACAGTCTGTGCCGGATTTTTCTGCTGTGCTGAGGAAGGAGAATAGGAAGCCGGTGAATGGTAACGTGTTACCTCCTTTGATGGAGTTGACACCTCCTTCTTCCAAGGGTGTTCTGTCGAGTGCGAGAGGGAGTAAGTCAGCGAATGCTGGTGAGAAGAGAAGGGCTGTTGGTGGTGGTGTTCTCATGCCGAGGAAGAGCTATGCCAGTATTGATGAACTAAAGAGTTTGCCTAATGCCATCAATGGTGAGAACAGAGGAGGAAGGAGTAGCAGGGTCATCACAAGAAAGACTGTTTTAGGGTATAGGCACATTTGA
Predicted protein sequences of Glyma18g53320
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g53320.1 sequence type=predicted peptide gene model=Glyma18g53320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTLLMNPTQHNPNVSLQQHSNPTLDTISLMKQGFLMMEEDFERGPRYHAYAALRETKLRMKYTRQQEYEQEEEKEGVVEAKVLTLTPPRKKQVKFQDGGTGVVSGRKGSSYSSSSSLVAQSVPDFSAVLRKENRKPVNGNVLPPLMELTPPSSKGVLSSARGSKSANAGEKRRAVGGGVLMPRKSYASIDELKSLPNAINGENRGGRSSRVITRKTVLGYRHI*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
