SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G16140 | AT | Annotation by Michelle Graham. TAIR10: Peptidyl-tRNA hydrolase family protein | chr5:5270308-5271517 REVERSE LENGTH=240 | SoyBase | E_val: 1.00E-112 | ISS |
| GO:0006412 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translation | SoyBase | N/A | ISS |
| GO:0006783 | GO-bp | Annotation by Michelle Graham. GO Biological Process: heme biosynthetic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004045 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aminoacyl-tRNA hydrolase activity | SoyBase | N/A | ISS |
| KOG2255 | KOG | Peptidyl-tRNA hydrolase | JGI | ISS | |
| PTHR17224 | Panther | PEPTIDYL-TRNA HYDROLASE | JGI | ISS | |
| PF01195 | PFAM | Peptidyl-tRNA hydrolase | JGI | ISS | |
| UniRef100_C6TK07 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TK07_SOYBN | SoyBase | E_val: 5.00E-180 | ISS |
| UniRef100_G7KUB5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Chloroplastic group IIB intron splicing facilitator CRS2-B n=1 Tax=Medicago truncatula RepID=G7KUB5_MEDTR | SoyBase | E_val: 2.00E-137 | ISS |
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Glyma18g53310 not represented in the dataset |
Glyma18g53310 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g48210 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g295600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g53310.1 sequence type=CDS gene model=Glyma18g53310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGCATGCAGTATCTGCCCCTAGCTTTTGTTTAAGCTATCCCGGGAACCTTCATTATCCTCCTTCTTCAGTTCAAAAAACATGTTTTTCTGTTCGTTGTTCGGTTTCACAGACAAAAAATGGAGCTAAAGTGGAATATACTCCTTGGCTCATTATTGGCTTGGGCAATCCTGGTAACAAATACCATGGCACAAGGCACAATGTTGGATTTGAAATAATTGATAGCCTTTCTCGAGCAGAAGGGATTCAGATGAACACAATACAGTCAAAGGCCCTCATTGGAATAGGTTCTATTGGTGAAGTACCGATTTTGCTGGCAAAGCCCCAAACATACATGAATTTCAGTGGGGAATCGGTTGGGCCACTTGCTGCATATTATCAAGTACCCTTGCGTCATATTCTACTAGTTTTTGATGAGACAAGCCTTCCAAATGGTGTTTTAAGGCTTCAACCTAAAGGCGGACATGGACATCACAATGGATTGAAAAATGTAATGGGCCATTTGGATGGTTGCAGTGCTTTTCCTCGACTTGCAGTCGGAATTGGAAATCCTCCTGGAACTATGGATTTAAGAGCTTATCTTCTACAAAAATTCAGTGTAGAGGAACGAAAGCAGATTGACGCTTCATTGGAGCAAGCAGTTGCAGCAGTAAGGACCGTAGTACTCAATGGTTTTGACCAGCATGTCAATAGATTCAATTTAGGACAAAAATACAAGTACCATAAAGTTTAA
>Glyma18g53310.1 sequence type=predicted peptide gene model=Glyma18g53310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLHAVSAPSFCLSYPGNLHYPPSSVQKTCFSVRCSVSQTKNGAKVEYTPWLIIGLGNPGNKYHGTRHNVGFEIIDSLSRAEGIQMNTIQSKALIGIGSIGEVPILLAKPQTYMNFSGESVGPLAAYYQVPLRHILLVFDETSLPNGVLRLQPKGGHGHHNGLKNVMGHLDGCSAFPRLAVGIGNPPGTMDLRAYLLQKFSVEERKQIDASLEQAVAAVRTVVLNGFDQHVNRFNLGQKYKYHKV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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