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Report for Sequence Feature Glyma18g53260

Feature Type:gene_model
Chromosome:Gm18
Start:61561388
stop:61562992
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g53260
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G16170AT Annotation by Michelle Graham. TAIR10: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr5:5277926-5279751 FORWARD LENGTH=411 SoyBaseE_val: 3.00E-121ISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
PF02485PFAM Core-2/I-Branching enzyme JGI ISS
UniRef100_I1KZM9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KZM9_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q6AVG1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q6AVG1_ORYSJ SoyBaseE_val: 2.00E-116ISS

Expression Patterns of Glyma18g53260
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g53260
ParalogEvidenceComments
Glyma08g48270 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g53260 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g295200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g53260
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g53260
>Glyma18g53260.2   sequence type=CDS   gene model=Glyma18g53260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATTCTTTGGTCCCTTGTATAGGAACATAAACAAAGGGTACAACTTGGTTTTCTTTATAATTGGCGTATCACTAGGAATAGCTGCAGTTTTATGCCTTAAACTATCTTTCAGTTTACAGGCCTTTCTGTATCCTGTGATTACCCCAATCACAACAATTCTTCCACCACCATTATCATCATCACGACTATTATCTGTGACTGAACAACCACCTAGTACTGAATTAAAGACATCTCTGATGCACAGCATGACCGACCAAGAGTTGTTCCTGAAAGCATCATCCATGGTTTCAGGTACTCAAGATTTTACTCAGCAAGCCGTTCCAAAAGTGGCCTTCATGTTCTTGGCTAGAGGTCCACTACCCCTGGCACCCTTGTGGGAGAAATTCTTCAAAGACCATGATGGATTTTACTCCATTTACCTGCACCAACATCCTTGTTACAGTGAAACCATGCCTGAAGATTCTGTATTCTATGGAAGAAATATTCCTAGCGAGCTAGTGGTCTGGGGCGCACCATCATTGATGGATGCCGGAAAACGTCTTCTAGCAAATGCACTAATGGACTTATCCAACCAACGTTTTGTGCTGCTATCAGAATCATGCATCCCCTTATTTGGCTTCAGAACCATATATGACTATCTCATGAACTCAAGCACGAGCTTCTCAGACTCTTTTGATGACCCAGGATACGATGCCAGAGGAAGATACTGCCCAAAAATGAGGCCTATAATTGACATAACCGATTGGAGAAAAGGGTCTCAATGGTTTGAGGTGCATCGTGAGCTTGCCATTCACATTGTATCTGACACCAAATACTATCCTATAGTTCAGCACTATTGTACTTCACCATGCTTTGCAGAAGAGCATTATATACCAACTTTTGTGCATATGATGTACCCTCAATTAAGCTCCAATAGTAGCATCACTTGGGTGGATTGGTCAAGGCGTGGCCCTCATCCTCGAACATTTGGGTCCAATGATATTACAGAAGCGTTTTTGAACCACATGAGGTTTGGATCAACATGTGTTTATGAAGGGAACATCACCAACATGTGCTTCCTTTTTGCAAGAAAGTTTCATCCAAGCGCATTGAAGCCTTTATTATTGCTATTGTCTCCCTTGATGCTTGGTGCTGATACTTAA
Predicted protein sequences of Glyma18g53260
>Glyma18g53260.2   sequence type=predicted peptide   gene model=Glyma18g53260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFFGPLYRNINKGYNLVFFIIGVSLGIAAVLCLKLSFSLQAFLYPVITPITTILPPPLSSSRLLSVTEQPPSTELKTSLMHSMTDQELFLKASSMVSGTQDFTQQAVPKVAFMFLARGPLPLAPLWEKFFKDHDGFYSIYLHQHPCYSETMPEDSVFYGRNIPSELVVWGAPSLMDAGKRLLANALMDLSNQRFVLLSESCIPLFGFRTIYDYLMNSSTSFSDSFDDPGYDARGRYCPKMRPIIDITDWRKGSQWFEVHRELAIHIVSDTKYYPIVQHYCTSPCFAEEHYIPTFVHMMYPQLSSNSSITWVDWSRRGPHPRTFGSNDITEAFLNHMRFGSTCVYEGNITNMCFLFARKFHPSALKPLLLLLSPLMLGADT*






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