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Report for Sequence Feature Glyma18g53250

Feature Type:gene_model
Chromosome:Gm18
Start:61558846
stop:61561145
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G39060AT Annotation by Michelle Graham. TAIR10: Nodulin MtN3 family protein | chr2:16306818-16308206 REVERSE LENGTH=258 SoyBaseE_val: 1.00E-88ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0005887GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0051119GO-mf Annotation by Michelle Graham. GO Molecular Function: sugar transmembrane transporter activity SoyBaseN/AISS
KOG1623 KOG Multitransmembrane protein JGI ISS
PTHR10791Panther STROMAL CELL PROTEIN/NODULIN MTN3-RELATED JGI ISS
PF03083PFAM MtN3/saliva family JGI ISS
UniRef100_G7K8I6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein RUPTURED POLLEN GRAIN n=1 Tax=Medicago truncatula RepID=G7K8I6_MEDTR SoyBaseE_val: 9.00E-117ISS
UniRef100_UPI000233F2A4UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F2A4 related cluster n=1 Tax=unknown RepID=UPI000233F2A4 SoyBaseE_val: 0ISS

LocusGene SymbolProtein Name
SWEET44 sucrose effluxer gene 44

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma02g09710 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Glyma08g48281 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g295100 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma18g53250.2   sequence type=CDS   gene model=Glyma18g53250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAAAGATATAAAACACAGATTGTTCTACTCATACCTCACAAAAGGCAAAGCTTATTCCCCCAAGACTTATCTGGCACTAGCAAACACCTCTATATTTAAAATGGTTCTATTTTCTGATCATGAGCTGGTTTTGATCTTTGGTCTCCTAGGTAACATTGTGTCATTCATGGTGTTCTTAGCACCCTTGCCAACCTTCTATACAATTTACAAGAACAAATCATCTGAAGGATTTCAATCAATTCCATATGTGGTTGCACTTCTTAGCGCACTGTTGCTTCTATATTATGGCTTCATAAAGACCAATGCTACTTTGATTATCACCATTAACTGTATTGGATGTGTTATAGAAGTTTCATACCTAGCAATGTACATTATATATGCTCCCAGGAAGCAGAAGATTTCCACTTTGGTAATGATACTCATTGCCGACATTGGAGGTTTTGGCTTAACCATGTTAATCACCACCTTTGCTGTGAAGGGAATTAACCGTGTCCATGCTGTGGGATGGATTTGTGCCATTTTTAACATTGCAGTGTTCGCTGCTCCCTTGAGCATAATGAGGAGGGTCATAAAAACCAAAAGTGTAGAGTTCATGCCATTTTCATTGTCCTTATTTCTCACGCTCTGCGCCACCATGTGGTTTTTCTATGGGTTCTTCGATAAGGATAACTTCATTATGTTGCCAAATGTGCTAGGATTTCTGTTTGGCATCTCTCAAATGATCTTGTACATGATATACAAGAATGCTAAGAAGAATGGAGAAATCAATTGTACAGAGCAGCAAGAAAGGGATGGCACAGTGAACTCCAAACAGCACAGCTGCAATGGCAACAAACTCGATTTCTCTTCACTGGTAGAAATGAAAGAGAATCAACTCAATCAAGTTTGA

>Glyma18g53250.2   sequence type=predicted peptide   gene model=Glyma18g53250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKDIKHRLFYSYLTKGKAYSPKTYLALANTSIFKMVLFSDHELVLIFGLLGNIVSFMVFLAPLPTFYTIYKNKSSEGFQSIPYVVALLSALLLLYYGFIKTNATLIITINCIGCVIEVSYLAMYIIYAPRKQKISTLVMILIADIGGFGLTMLITTFAVKGINRVHAVGWICAIFNIAVFAAPLSIMRRVIKTKSVEFMPFSLSLFLTLCATMWFFYGFFDKDNFIMLPNVLGFLFGISQMILYMIYKNAKKNGEINCTEQQERDGTVNSKQHSCNGNKLDFSSLVEMKENQLNQV*







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