Report for Sequence Feature Glyma18g53250
Feature Type: gene_model
Chromosome: Gm18
Start: 61558846
stop: 61561145
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g53250
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G39060 AT
Annotation by Michelle Graham. TAIR10: Nodulin MtN3 family protein | chr2:16306818-16308206 REVERSE LENGTH=258
SoyBase E_val: 1.00E-88 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0005887 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0016021 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane
SoyBase N/A ISS
GO:0051119 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sugar transmembrane transporter activity
SoyBase N/A ISS
KOG1623
KOG
Multitransmembrane protein
JGI ISS
PTHR10791 Panther
STROMAL CELL PROTEIN/NODULIN MTN3-RELATED
JGI ISS
PF03083 PFAM
MtN3/saliva family
JGI ISS
UniRef100_G7K8I6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein RUPTURED POLLEN GRAIN n=1 Tax=Medicago truncatula RepID=G7K8I6_MEDTR
SoyBase E_val: 9.00E-117 ISS
UniRef100_UPI000233F2A4 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233F2A4 related cluster n=1 Tax=unknown RepID=UPI000233F2A4
SoyBase E_val: 0 ISS
Proteins Associated with Glyma18g53250
Locus Gene Symbol Protein Name
SWEET44 sucrose effluxer gene 44
Expression Patterns of Glyma18g53250
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma18g53250
Paralog Evidence Comments
Glyma02g09710 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Glyma08g48281 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g53250 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g295100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g53250
Coding sequences of Glyma18g53250
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g53250.2 sequence type=CDS gene model=Glyma18g53250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATAAAGATATAAAACACAGATTGTTCTACTCATACCTCACAAAAGGCAAAGCTTATTCCCCCAAGACTTATCTGGCACTAGCAAACACCTCTATATTTAAAATGGTTCTATTTTCTGATCATGAGCTGGTTTTGATCTTTGGTCTCCTAGGTAACATTGTGTCATTCATGGTGTTCTTAGCACCCTTGCCAACCTTCTATACAATTTACAAGAACAAATCATCTGAAGGATTTCAATCAATTCCATATGTGGTTGCACTTCTTAGCGCACTGTTGCTTCTATATTATGGCTTCATAAAGACCAATGCTACTTTGATTATCACCATTAACTGTATTGGATGTGTTATAGAAGTTTCATACCTAGCAATGTACATTATATATGCTCCCAGGAAGCAGAAGATTTCCACTTTGGTAATGATACTCATTGCCGACATTGGAGGTTTTGGCTTAACCATGTTAATCACCACCTTTGCTGTGAAGGGAATTAACCGTGTCCATGCTGTGGGATGGATTTGTGCCATTTTTAACATTGCAGTGTTCGCTGCTCCCTTGAGCATAATGAGGAGGGTCATAAAAACCAAAAGTGTAGAGTTCATGCCATTTTCATTGTCCTTATTTCTCACGCTCTGCGCCACCATGTGGTTTTTCTATGGGTTCTTCGATAAGGATAACTTCATTATGTTGCCAAATGTGCTAGGATTTCTGTTTGGCATCTCTCAAATGATCTTGTACATGATATACAAGAATGCTAAGAAGAATGGAGAAATCAATTGTACAGAGCAGCAAGAAAGGGATGGCACAGTGAACTCCAAACAGCACAGCTGCAATGGCAACAAACTCGATTTCTCTTCACTGGTAGAAATGAAAGAGAATCAACTCAATCAAGTTTGA
Predicted protein sequences of Glyma18g53250
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g53250.2 sequence type=predicted peptide gene model=Glyma18g53250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDKDIKHRLFYSYLTKGKAYSPKTYLALANTSIFKMVLFSDHELVLIFGLLGNIVSFMVFLAPLPTFYTIYKNKSSEGFQSIPYVVALLSALLLLYYGFIKTNATLIITINCIGCVIEVSYLAMYIIYAPRKQKISTLVMILIADIGGFGLTMLITTFAVKGINRVHAVGWICAIFNIAVFAAPLSIMRRVIKTKSVEFMPFSLSLFLTLCATMWFFYGFFDKDNFIMLPNVLGFLFGISQMILYMIYKNAKKNGEINCTEQQERDGTVNSKQHSCNGNKLDFSSLVEMKENQLNQV*