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Report for Sequence Feature Glyma18g53203

Feature Type:gene_model
Chromosome:Gm18
Start:61517162
stop:61518312
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g53203
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G66940AT Annotation by Michelle Graham. TAIR10: protein kinase-related | chr1:24973596-24974684 REVERSE LENGTH=309 SoyBaseE_val: 1.00E-24ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_B9RSP6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Wall-associated kinase, putative n=1 Tax=Ricinus communis RepID=B9RSP6_RICCO SoyBaseE_val: 2.00E-29ISS
UniRef100_UPI000233DFB6UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233DFB6 related cluster n=1 Tax=unknown RepID=UPI000233DFB6 SoyBaseE_val: 4.00E-175ISS

Expression Patterns of Glyma18g53203
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g53203 not represented in the dataset
Glyma18g53203 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g53203 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g294500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g53203
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g53203
>Glyma18g53203.1   sequence type=CDS   gene model=Glyma18g53203   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCCTGCTTATTCACCTCCCTCCTATCCCTATTCTTCAACACTTTATCCTCCTCCTCATACTGATTCAGACACCTCCATATTTAAGCTCCTACAATGATGATAGGGGTTGTACTAATCAGCTGATAAGTTGTGGGAATATAAAAAACATTGGTTTTCCATTCTGGGGAGAAAAACGACCAAGAGATTGTGGCCACCCTCGGATGCAACTCAGCTGCGAACAGGAGATCACCTACATAAACATTAATGATTTCAGGTACAAGGTTTTGGAGGTAAACCCAGATAACCATACTTTGAGAATCACTAGAGAGGACTACTTGGAAGGCATATGCCAACCAAAGTTTGTCACCACCAGCCTTGACACTGAGCTCTATGTCCATGACTCAGCCTATAAGAATCTTACCCTTTTCTATTGTGCTAATGATTTGCCTTCCACCACTGGATTTCTGCCTAGTTGTGTCCCAAATGGCAATTATGTTTATCCTCGATTTGAGCCTCTGCCTCCTCCTAATTATTATGCCTCTTGCAAAACAGTGGTTGTTCCAGTTCCTCCGTCCTTAGTTGATACTAGTGATGCTGACAAAATACACAATGCAATCATAGACGGATTTGTGGTGAGATGGATAGTGGGCATTGGAGAATGTGAGAAGTGTATGATATCAGCAGGTAGAGTATGCGGCGGTATTGAATGGTATCCAAATCAAACATGTTACTGCAGAGATGGACCTTGTTCTAATTTCTTACCAGATGACAAAGCACCGCAGTCCCCACCTACAGGTACTTCTAAGTTCATTGATTATTACTTTTTCTGTTTTCTGTTGATAGCTGACGGGGACTAA
Predicted protein sequences of Glyma18g53203
>Glyma18g53203.1   sequence type=predicted peptide   gene model=Glyma18g53203   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLLIHLPPIPILQHFILLLILIQTPPYLSSYNDDRGCTNQLISCGNIKNIGFPFWGEKRPRDCGHPRMQLSCEQEITYININDFRYKVLEVNPDNHTLRITREDYLEGICQPKFVTTSLDTELYVHDSAYKNLTLFYCANDLPSTTGFLPSCVPNGNYVYPRFEPLPPPNYYASCKTVVVPVPPSLVDTSDADKIHNAIIDGFVVRWIVGIGECEKCMISAGRVCGGIEWYPNQTCYCRDGPCSNFLPDDKAPQSPPTGTSKFIDYYFFCFLLIADGD*






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