Glyma18g53150 - SoyBase

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Report for Sequence Feature Glyma18g53150

Feature Type:	gene_model
Chromosome:	Gm18
Start:	61495343
stop:	61496275
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g53150

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18280	AT	Annotation by Michelle Graham. TAIR10: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein \| chr3:6267102-6267392 FORWARD LENGTH=96	SoyBase	E_val: 2.00E-28	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0006869	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid transport	SoyBase	N/A	ISS
GO:0009963	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0008289	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lipid binding	SoyBase	N/A	ISS
PF00234	PFAM	Protease inhibitor/seed storage/LTP family	JGI		ISS
UniRef100_I1N5A0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N5A0_SOYBN	SoyBase	E_val: 6.00E-60	ISS
UniRef100_Q43681	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Probable non-specific lipid-transfer protein AKCS9 n=1 Tax=Vigna unguiculata RepID=NLTP_VIGUN	SoyBase	E_val: 1.00E-30	ISS

Expression Patterns of Glyma18g53150

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g53150

Paralog	Evidence	Comments
Glyma02g09780	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g53150 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g294200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g53150

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g53150

Limit To All Plant Sequences

>Glyma18g53150.1   sequence type=CDS   gene model=Glyma18g53150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGATGAAGTCTGCTATGTGTGCATTGGTGCTTGTGGCACTGGTTGTGGTTGAAGTGGGGCCCATGGCTGAGGCTGCGGTGACTTGCAACCCAACACAGTTGACTCCTTGTCTTCCGGCAATTAATTCAGGTTCTGCACCTTCGAGTGCTTGTTGCCAGAAGCTGAAGGAGCAAAAGCCATGCTTCTGTGGCTACCTCAAAAACCCTAGCTTGAAGCAGTATGTTAACTCTCCTAATGCCAAAAAAACCGTTAGTTCTTGTGGTATTGCCTATCCAACTTGTTAA

Predicted protein sequences of Glyma18g53150

Limit To All Plant Sequences

>Glyma18g53150.1   sequence type=predicted peptide   gene model=Glyma18g53150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMMKSAMCALVLVALVVVEVGPMAEAAVTCNPTQLTPCLPAINSGSAPSSACCQKLKEQKPCFCGYLKNPSLKQYVNSPNAKKTVSSCGIAYPTC*

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