Glyma18g53131 - SoyBase

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Report for Sequence Feature Glyma18g53131

Feature Type:	gene_model
Chromosome:	Gm18
Start:	61476831
stop:	61479476
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g53131

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G66840	AT	Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF827) \| chr1:24933998-24936116 REVERSE LENGTH=607	SoyBase	E_val: 3.00E-104	ISS
GO:0009637	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to blue light	SoyBase	N/A	ISS
GO:0009903	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast avoidance movement	SoyBase	N/A	ISS
GO:0009904	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast accumulation movement	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PF05701	PFAM	Plant protein of unknown function (DUF827)	JGI		ISS
UniRef100_G7KV75	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein PLASTID MOVEMENT IMPAIRED n=1 Tax=Medicago truncatula RepID=G7KV75_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233DFB3	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DFB3 related cluster n=1 Tax=unknown RepID=UPI000233DFB3	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g53131

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g53131 not represented in the dataset	Glyma18g53131 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g53131

Paralog	Evidence	Comments
Glyma02g09801	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g53131 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g294100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g53131

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g53131

Limit To All Plant Sequences

>Glyma18g53131.1   sequence type=CDS   gene model=Glyma18g53131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGGTGTAAAGCTTGGTAGCAAAAGAGTTGGATCAGTTAATGCTGCTGTTAACTTCTATGATGATAAGAAGCCCTCTTCAAGAACAAAGGAACTCCACAGAGCAAGAAGGGATATTGGAAGGTACAAGGAGAGCAAATGGACTGCAGAATCTGCAAAAGCTCAAGCAGAATCTGAGCTTTCGAATGCGAAGAAGACAGCAAACCATCTTTCTTCTATGCTTGAGGAGTCAAATTACAAGGCAAAAACACAAATGAGAGATGTAGAAAGACTAGAGAAGTGGGGGAAGGGCCAACATGGGACAATTGTTGTTGCAAAGAGGAATGAAAATTTTGAGTATGCACAAGTCATGAGAGAGTTGGAATATCTCAAAAAGGAACTGTTCAAGCTTAAGCTTGATGTGGCTTATGTGATGGAACAGAAATCGCGGGCAGAGAAGGAAATTGAAGCATCAAACTCGAAGATGCTATCATGTTTAACAACTGCAGAAGAACTTAGAAGGGAGATTGAGGAGGCCAACGAGGAGCAAGTACTTGCTGAACTGGCCAGGATTGAGGCTTCGAAAGAACTGACAGATATTGAGACCCAGAGAAAACAGGAAGCAAATGAATTTTCATTCAAATTGGAAAGCACGAGGAGAAAGTTGAAGGAGGCCATTGAAGAGATTGATGAGTCAAAGGAGCTTGAAATGAAATTGGCTGTGACAATATCAGATGTTGATTTCTTGCAGAATGAGTTAAAGTCAGTTAAGGAAATGGATAAAAGGGTTCAAGGAGATGGGAGTGCAAAGCAATTGGAAGGAAGATTCAAAAAAGGGGAGGAATCAGAAGACTCTATAGTGTTACAAACTATAACAGAAGAATTGGAGGCAGCTAGGAAAGAATTAGCTTTGGTTAGAGAAGAAGGTTTCCAGTTTATGGCCTCTTTGGATGTCATAAGAAATGAGTTGAAGCATGTCACTGCTGAGACAGATAGGTTGAAGAAGAAGGAAGGGAAAGTAGACTCAACAGTTCAAAATCTCAATTTCAAGATTTTGAGAGCAAAGTCTAAATTAGAAGCTGTGTCTGCTGCTGAGGAAAAGGCCAGATCCATAGTCATGAGTCTGTCTCATACTCTTGAAAAGCTGAAGACAGAAACAGAAGAAGCAAAAAAGGAAAATGAGGATGTAAGCCAGGAGGTTGCAGCCACCAAGGAAGAAATTCAAAAAGTTGAGTTGGATATAGACACGACCGAGGAAAGATTGCAAGGCGTCATGCAAGAGCTAGAAGTAGCCAAAGCATCTGAAGCTCTAGCCTTAGAGAAGCTGAAAACTCTTACTGAGAGGACCATGAGAGAAAGAGCTTTAACAGCACAGCATAGTTCCATGATCACTATCTCAAAATTTGAGTATGAGTATCTAACAAATCATGCAGCCTCAGCAGAAGAAATTGCTGATAAAAAAGTAGCAGCAGCTGAGGCATGGATTGAAGCTCTCAAGGCCAGCGAGAAGGAAATACTGATGGAAACAAAAATAGCTCAAAGAGAACTCAAAGAATCAAAATTGGAGCAAGAGCTGGAGGTTTACACCAAAGAGAAGATGCTTTCAAGAAGAGTTAGTAGTAGTGAGGAGCTTGACAATTGGCCAAGAAAACGCGAGAAGACTTCATCCAAGAACTTCCAGAGAGCCTTGTCTAGAAAGAGCATCAAACTTAATGGCACTATAACTCCTGCAAGGGGAGCAAAGTTTCAGAAGACTGCTTCACCTGCAGCTCGGCATATCAGTCCTTTTACTATTAAGAAGAGAAAGAAGGTAATACCAAATTTGACAAAGCTTTTTAGGGGCAAGAAAAACACTAGGGATAGATAG

Predicted protein sequences of Glyma18g53131

Limit To All Plant Sequences

>Glyma18g53131.1   sequence type=predicted peptide   gene model=Glyma18g53131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGVKLGSKRVGSVNAAVNFYDDKKPSSRTKELHRARRDIGRYKESKWTAESAKAQAESELSNAKKTANHLSSMLEESNYKAKTQMRDVERLEKWGKGQHGTIVVAKRNENFEYAQVMRELEYLKKELFKLKLDVAYVMEQKSRAEKEIEASNSKMLSCLTTAEELRREIEEANEEQVLAELARIEASKELTDIETQRKQEANEFSFKLESTRRKLKEAIEEIDESKELEMKLAVTISDVDFLQNELKSVKEMDKRVQGDGSAKQLEGRFKKGEESEDSIVLQTITEELEAARKELALVREEGFQFMASLDVIRNELKHVTAETDRLKKKEGKVDSTVQNLNFKILRAKSKLEAVSAAEEKARSIVMSLSHTLEKLKTETEEAKKENEDVSQEVAATKEEIQKVELDIDTTEERLQGVMQELEVAKASEALALEKLKTLTERTMRERALTAQHSSMITISKFEYEYLTNHAASAEEIADKKVAAAEAWIEALKASEKEILMETKIAQRELKESKLEQELEVYTKEKMLSRRVSSSEELDNWPRKREKTSSKNFQRALSRKSIKLNGTITPARGAKFQKTASPAARHISPFTIKKRKKVIPNLTKLFRGKKNTRDR*

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