SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research



Report for Sequence Feature Glyma18g53050

Feature Type:gene_model
Chromosome:Gm18
Start:61434592
stop:61438926
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G66760AT Annotation by Michelle Graham. TAIR10: MATE efflux family protein | chr1:24902110-24904054 FORWARD LENGTH=466 SoyBaseE_val: 4.00E-120ISS
GO:0006855GO-bp Annotation by Michelle Graham. GO Biological Process: drug transmembrane transport SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009620GO-bp Annotation by Michelle Graham. GO Biological Process: response to fungus SoyBaseN/AISS
GO:0009695GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
GO:0015238GO-mf Annotation by Michelle Graham. GO Molecular Function: drug transmembrane transporter activity SoyBaseN/AISS
GO:0015297GO-mf Annotation by Michelle Graham. GO Molecular Function: antiporter activity SoyBaseN/AISS
KOG1347 KOG Uncharacterized membrane protein, predicted efflux pump JGI ISS
PTHR11206Panther MULTIDRUG RESISTANCE PUMP JGI ISS
PTHR11206:SF11Panther MULTI ANTIMICROBIAL EXTRUSION (MATE) FAMILY TRANSPORTER-RELATED JGI ISS
PF01554PFAM MatE JGI ISS
UniRef100_B9SPZ5UniRef Annotation by Michelle Graham. Most informative UniRef hit: TRANSPARENT TESTA 12 protein, putative n=1 Tax=Ricinus communis RepID=B9SPZ5_RICCO SoyBaseE_val: 1.00E-118ISS
UniRef100_UPI000233F29FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F29F related cluster n=1 Tax=unknown RepID=UPI000233F29F SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma02g09920 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g293300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma18g53050.2   sequence type=CDS   gene model=Glyma18g53050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGACCTTATTGTTGCCAAAAGAAAACAAGAGGGTGAGCTCAAACTCAAAGAGTAGTAGTAGTGGTAGTGGATTTGTCCAAGAATTTAAGAAGGTGAGTTTGATGGCAGCACCAATGGTTGTGGTCTCAGTGTCACAGTTTTTGCTACAGGTGGTGTCATTGATGATGGCTGGTATTGCATTGGCCACTTCCTTTGCAGATGTCACTGGCTTTAACATACTTATGGGAATGGCAGGTGCTTTGGAAACTCAATGTGCCCAATCATTTGGAACCGAGCAGTTTCATAAGCTTGGAAACTATGTCTTCTGTGCAATACTCTTTCTCATTTTAAGCAGTGCCCCAAAATCTATCCTATGGATTTTCATGGATAAACTGCTTGTTCTTTTGGGGCAAGATCATGCTATTTCACTAGTAGCTGGAAACTACTGCATTTGGCTCATTCCTGCACTCTTTGGTTATGCTGTTCTTCAAGCTTTGGTTCGTTATTTTCAGACTCAGAGCTTGATCTTTCCAATGCTTGTAACCTCAGTTGTTGTTTTAGTTTTGCATATACCTATTTGTTGGGTACTAGTGTTTGAACTGGGACTTGGACAAAATGAAGCGGCCTTATCCATTGGAATTTCGTATTGGCTCAGTGTCATGTTACTTATAGTTTACACATTGAGTGGTGGTCGGTCATTAGAGCTACTAGTAATACTTGCTGGTCTTTTACCAAATCCCAAACTTGAAACTTCAGTTCTATCAATCTGCCTTAAAATTTGCAACTTGCACTATTTCATTCCATATGGGACCGGTGCTGCAGTAAGTAGTCGGGTTTCAAACGAATTAGGGGCAGGAAGACCACAGGCAGCTCGAGAGGCTGTTTTTGCTGTAATTGTTCTAACATTCACGGATGCAATTGTCTTTAGCTCTGTTCTATTTTGCTTCCGTCATGTGCTGGGATTTGCATTTAGCAATGAGATGGAAGTTGTACATTCTGTTGCAAAGATAGTTCCAGTGCTTTGTCTCTCTTTCAGTGTGGATGGCTTTCTAGGAGTTTTGTGTGGAAGTAGATTGCAGAAGATGGGGGCAATTAGCAATCTTGTAGCATATTATGCTGTGGGAATCCCTGTGTCTCTCGTGTTTGGTTTTGGTCTTAATTTCTATGGGAAAGGCCTTTAG

>Glyma18g53050.2   sequence type=predicted peptide   gene model=Glyma18g53050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEETLLLPKENKRVSSNSKSSSSGSGFVQEFKKVSLMAAPMVVVSVSQFLLQVVSLMMAGIALATSFADVTGFNILMGMAGALETQCAQSFGTEQFHKLGNYVFCAILFLILSSAPKSILWIFMDKLLVLLGQDHAISLVAGNYCIWLIPALFGYAVLQALVRYFQTQSLIFPMLVTSVVVLVLHIPICWVLVFELGLGQNEAALSIGISYWLSVMLLIVYTLSGGRSLELLVILAGLLPNPKLETSVLSICLKICNLHYFIPYGTGAAVSSRVSNELGAGRPQAAREAVFAVIVLTFTDAIVFSSVLFCFRHVLGFAFSNEMEVVHSVAKIVPVLCLSFSVDGFLGVLCGSRLQKMGAISNLVAYYAVGIPVSLVFGFGLNFYGKGL*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo