Report for Sequence Feature Glyma18g53050
Feature Type: gene_model
Chromosome: Gm18
Start: 61434592
stop: 61438926
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g53050
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G66760 AT
Annotation by Michelle Graham. TAIR10: MATE efflux family protein | chr1:24902110-24904054 FORWARD LENGTH=466
SoyBase E_val: 4.00E-120 ISS
GO:0006855 GO-bp
Annotation by Michelle Graham. GO Biological Process: drug transmembrane transport
SoyBase N/A ISS
GO:0009611 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to wounding
SoyBase N/A ISS
GO:0009620 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to fungus
SoyBase N/A ISS
GO:0009695 GO-bp
Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process
SoyBase N/A ISS
GO:0009753 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus
SoyBase N/A ISS
GO:0055085 GO-bp
Annotation by Michelle Graham. GO Biological Process: transmembrane transport
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0005215 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transporter activity
SoyBase N/A ISS
GO:0015238 GO-mf
Annotation by Michelle Graham. GO Molecular Function: drug transmembrane transporter activity
SoyBase N/A ISS
GO:0015297 GO-mf
Annotation by Michelle Graham. GO Molecular Function: antiporter activity
SoyBase N/A ISS
KOG1347
KOG
Uncharacterized membrane protein, predicted efflux pump
JGI ISS
PTHR11206 Panther
MULTIDRUG RESISTANCE PUMP
JGI ISS
PTHR11206:SF11 Panther
MULTI ANTIMICROBIAL EXTRUSION (MATE) FAMILY TRANSPORTER-RELATED
JGI ISS
PF01554 PFAM
MatE
JGI ISS
UniRef100_B9SPZ5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: TRANSPARENT TESTA 12 protein, putative n=1 Tax=Ricinus communis RepID=B9SPZ5_RICCO
SoyBase E_val: 1.00E-118 ISS
UniRef100_UPI000233F29F UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233F29F related cluster n=1 Tax=unknown RepID=UPI000233F29F
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g53050
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma18g53050
Paralog Evidence Comments
Glyma02g09920 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g53050 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g293300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g53050
Coding sequences of Glyma18g53050
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g53050.2 sequence type=CDS gene model=Glyma18g53050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGGAGACCTTATTGTTGCCAAAAGAAAACAAGAGGGTGAGCTCAAACTCAAAGAGTAGTAGTAGTGGTAGTGGATTTGTCCAAGAATTTAAGAAGGTGAGTTTGATGGCAGCACCAATGGTTGTGGTCTCAGTGTCACAGTTTTTGCTACAGGTGGTGTCATTGATGATGGCTGGTATTGCATTGGCCACTTCCTTTGCAGATGTCACTGGCTTTAACATACTTATGGGAATGGCAGGTGCTTTGGAAACTCAATGTGCCCAATCATTTGGAACCGAGCAGTTTCATAAGCTTGGAAACTATGTCTTCTGTGCAATACTCTTTCTCATTTTAAGCAGTGCCCCAAAATCTATCCTATGGATTTTCATGGATAAACTGCTTGTTCTTTTGGGGCAAGATCATGCTATTTCACTAGTAGCTGGAAACTACTGCATTTGGCTCATTCCTGCACTCTTTGGTTATGCTGTTCTTCAAGCTTTGGTTCGTTATTTTCAGACTCAGAGCTTGATCTTTCCAATGCTTGTAACCTCAGTTGTTGTTTTAGTTTTGCATATACCTATTTGTTGGGTACTAGTGTTTGAACTGGGACTTGGACAAAATGAAGCGGCCTTATCCATTGGAATTTCGTATTGGCTCAGTGTCATGTTACTTATAGTTTACACATTGAGTGGTGGTCGGTCATTAGAGCTACTAGTAATACTTGCTGGTCTTTTACCAAATCCCAAACTTGAAACTTCAGTTCTATCAATCTGCCTTAAAATTTGCAACTTGCACTATTTCATTCCATATGGGACCGGTGCTGCAGTAAGTAGTCGGGTTTCAAACGAATTAGGGGCAGGAAGACCACAGGCAGCTCGAGAGGCTGTTTTTGCTGTAATTGTTCTAACATTCACGGATGCAATTGTCTTTAGCTCTGTTCTATTTTGCTTCCGTCATGTGCTGGGATTTGCATTTAGCAATGAGATGGAAGTTGTACATTCTGTTGCAAAGATAGTTCCAGTGCTTTGTCTCTCTTTCAGTGTGGATGGCTTTCTAGGAGTTTTGTGTGGAAGTAGATTGCAGAAGATGGGGGCAATTAGCAATCTTGTAGCATATTATGCTGTGGGAATCCCTGTGTCTCTCGTGTTTGGTTTTGGTCTTAATTTCTATGGGAAAGGCCTTTAG
Predicted protein sequences of Glyma18g53050
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g53050.2 sequence type=predicted peptide gene model=Glyma18g53050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEETLLLPKENKRVSSNSKSSSSGSGFVQEFKKVSLMAAPMVVVSVSQFLLQVVSLMMAGIALATSFADVTGFNILMGMAGALETQCAQSFGTEQFHKLGNYVFCAILFLILSSAPKSILWIFMDKLLVLLGQDHAISLVAGNYCIWLIPALFGYAVLQALVRYFQTQSLIFPMLVTSVVVLVLHIPICWVLVFELGLGQNEAALSIGISYWLSVMLLIVYTLSGGRSLELLVILAGLLPNPKLETSVLSICLKICNLHYFIPYGTGAAVSSRVSNELGAGRPQAAREAVFAVIVLTFTDAIVFSSVLFCFRHVLGFAFSNEMEVVHSVAKIVPVLCLSFSVDGFLGVLCGSRLQKMGAISNLVAYYAVGIPVSLVFGFGLNFYGKGL*