Glyma18g53040 - SoyBase

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Report for Sequence Feature Glyma18g53040

Feature Type:	gene_model
Chromosome:	Gm18
Start:	61429811
stop:	61433999
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g53040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G66760	AT	Annotation by Michelle Graham. TAIR10: MATE efflux family protein \| chr1:24902110-24904213 FORWARD LENGTH=482	SoyBase	E_val: 5.00E-166	ISS
GO:0006855	GO-bp	Annotation by Michelle Graham. GO Biological Process: drug transmembrane transport	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009620	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fungus	SoyBase	N/A	ISS
GO:0009695	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0015238	GO-mf	Annotation by Michelle Graham. GO Molecular Function: drug transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015297	GO-mf	Annotation by Michelle Graham. GO Molecular Function: antiporter activity	SoyBase	N/A	ISS
KOG1347	KOG	Uncharacterized membrane protein, predicted efflux pump	JGI		ISS
PTHR11206	Panther	MULTIDRUG RESISTANCE PUMP	JGI		ISS
PTHR11206:SF11	Panther	MULTI ANTIMICROBIAL EXTRUSION (MATE) FAMILY TRANSPORTER-RELATED	JGI		ISS
PF01554	PFAM	MatE	JGI		ISS
UniRef100_B9SPZ5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: TRANSPARENT TESTA 12 protein, putative n=1 Tax=Ricinus communis RepID=B9SPZ5_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F29E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F29E related cluster n=1 Tax=unknown RepID=UPI000233F29E	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g53040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g53040

Paralog	Evidence	Comments
Glyma02g09931	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g53040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g293200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g53040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g53040

Limit To All Plant Sequences

>Glyma18g53040.3   sequence type=transcript   gene model=Glyma18g53040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTGCATAGAAAAACTGAGAGAGATGATGGATAAGGAGGAAGCAACACCATTGTTAAGAAAGAGTGAGGTGGCACCATTAGAGGATGATGATGCATTTTGTGTAGAGCTTAAAAGGGTAGGCTCCATGGCAGCTCCAATGCTGGCTGCGAATATGTGTCAGTACCTTCTACAAGTTGTGTCACTGATGATGGTGGGACATCTTGGGCTTCTTGTCTCATTCTCTGGGGTTGCAATTGCCATCTCTTTTGCTGAAGTTACCGGCTTTTGTGTTCTTATGGGAATGGCTGGTGCATTGGAAACTTTATGTGGCCAAACCTATGGTGCAGAAGAATTTACAGAGATTGGAAACTACACTTTTTGTGCAATTGTCACTTTGCTTTTGGTTTGTCTCCCCATATCTCTGCTGTGGATATTCATGGATAAAATACTATTGCTGTTTGGTCAAGACCCTGAAATTTCTCATGTAGCTCACAAGTACTGCATATGCTCCATCCCTGCACTGTATGGATTTGCTGTTCTTCAATGTCAGATCCGCTATTTCCAGACTCAGAGTATGATCTTTCCCATGGTTTTCAGCTCAATTGCGGTTCTGTGTTTGCATGTTCCTATTTGTTGGGGTCTGGTATTCAAATTGGGGCTGGGACATGTTGGAGCAGCATATGCTATTGGAATTTCATATTGGTTAAATGTCATTGGGCTTGGAATTTATATGAATTATTCTCCAGCATGTGAGAAGACCAAAATTGTGTTTTCATTTAATGCTTTACTAAGCATTCCAGAGTTCTGCCAATTTGCTATTCCTTCTGGGCTGATGTTTTGTTTTGAAATGTGGTCATTTGAGCTACTTACATTATTTGCTGGGCTTTTACCTAATCCACAACTTCAAACCTCAGTTCTTTCTGTCTGCCTTAACACAACAACATTGCACTACATCATTCCATATGCTGTTGGAGCTTCTGCAAGTACTCGCATTTCGAATGAATTAGGAGCAGGGAATCCAAAGGCAGCTCAAGGCATATATTAGGATATGCTTATAGCAATGACAAGGAAGTTGTAGATTATGTTTCAGACATTGTTCCCATTCTTTGTGGATCTTTTACTGCAGATAGTCTAATAGGAGCTCTTTCCGGGATTGCAAGAGGTGGTGGATTTCAGCAAATAGGGGCTTATGTGAACCTTGGAGCCTATTATCTTGTGGGAGTTCCTTTGGCATTCTTATTGGGTTTTGTTCTACATTTCAATGCCAAGGGACTCTGGATGGGAAGTCTTACAGGGTCTGTTCTACAAGTGATTATTCTGACTGTTGTAACAGTGTTAACAGATTGGCAGAAAGAGGCAACGAAAGCAAGGGAGAGAATAGTTGAGAAGTCAATTAAAGTTCATAATGATTCAGTGATATGATCCAAGGATCCAATCACTATAATAACTTGGGAAGCCTAAAACATGGGATGTTTAGAAGGAAGTCTAGCCTATAAACAATAGGAACTTTGTAGCTTTGAGGCATATTGGAGTCTGAATGAAAGTTTGAGTTTTCTACCTTTTGTGAGAGCTTCCCTTGGTTCTAGGCAAAGAACTAAATTTGACCTTATCAAGGTAACTTGTGGCGATCAAATCTATGACTTATCACCCATCTTCTCCCCTATTTCTTGAGTGCGGCGTCAATATCCTTTTCTAAAAGAAAACTAAATCAATTTCTTAGTATGAAAACTTCAACCCGATCCGTCTCGTTTCCGTGTTCATATCATTCAGTGAGAAATTTTTTAAATATAGTAGAAGAATGAAAGAGTGGAAAAAAAAGGAAGTACTGACTAATTTTCTGTTAGATTCTGGTTTTGCTATTGTTTCTATTTTTTGGTGAAGTAAACAGATAAAAGTTATTATGTCTGTATATATGTGATTTAAGAACCGGAATTGTGCCTATGAAGTGTAAGGGTAGCACATAAGTCAGAACTTAGAAAATTATTCATGACATGCTGCAGTTACATGGAGGTGGATCCGGGCTTCCATTTTAGTATCTCTTTCATGTTCTGTGTCGAGGCAAGGAATTGATCTTCAGATTGAGGGTGTGTTTTGTTTGGAGTGTGTTAACAAGGGGCTATTTCTATAAGGTTGGTCCTTCATTGCGGTACAGGGTTGGTGATAACGTGGATTTTTTATTGTTGTTGGATGAAAAGTCGACATGGATCTTTATATTGTTGTGGGATGAAAAGTGGTGGGAGCCTCTACGGTTTTGCAGATTCAATGGAATTTAATAGTATCGAGGTGGAAGATGTATGTTTTATAGTCTTGAGTTAATTACAACCAAATAAGCTTTGGAAGTAATGGTAACTATAATGGTAATTACGTTGGGTGTGACATATAGTTGTTTTATGTTTGTTAGGGGGGTGGATGAACTATTGTTTTGCATTGCTTTTTTTTTTTTTTAGCTTTCGTTATTACAAATCTTTGTACTGTTGTTGACATATTTGGAGTGATCACATCTTGTGGTGTATCCAAATCTGTTTTATTTTAATACAAGTTTCTTTGGCTTTTTTTC

Coding sequences of Glyma18g53040

Limit To All Plant Sequences

>Glyma18g53040.2   sequence type=CDS   gene model=Glyma18g53040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCTCCAATGCTGGCTGCGAATATGTGTCAGTACCTTCTACAAGTTGTGTCACTGATGATGGTGGGACATCTTGGGCTTCTTGTCTCATTCTCTGGGGTTGCAATTGCCATCTCTTTTGCTGAAGTTACCGGCTTTTGTGTTCTTATGGGAATGGCTGGTGCATTGGAAACTTTATGTGGCCAAACCTATGGTGCAGAAGAATTTACAGAGATTGGAAACTACACTTTTTGTGCAATTGTCACTTTGCTTTTGGTTTGTCTCCCCATATCTCTGCTGTGGATATTCATGGATAAAATACTATTGCTGTTTGGTCAAGACCCTGAAATTTCTCATGTAGCTCACAAGTACTGCATATGCTCCATCCCTGCACTGTATGGATTTGCTGTTCTTCAATGTCAGATCCGCTATTTCCAGACTCAGAGTATGATCTTTCCCATGGTTTTCAGCTCAATTGCGGTTCTGTGTTTGCATGTTCCTATTTGTTGGGGTCTGGTATTCAAATTGGGGCTGGGACATGTTGGAGCAGCATATGCTATTGGAATTTCATATTGGTTAAATGTCATTGGGCTTGGAATTTATATGAATTATTCTCCAGCATGTGAGAAGACCAAAATTGTGTTTTCATTTAATGCTTTACTAAGCATTCCAGAGTTCTGCCAATTTGCTATTCCTTCTGGGCTGATGTTTTGTTTTGAAATGTGGTCATTTGAGCTACTTACATTATTTGCTGGGCTTTTACCTAATCCACAACTTCAAACCTCAGTTCTTTCTGTCTGCCTTAACACAACAACATTGCACTACATCATTCCATATGCTGTTGGAGCTTCTGCAAGTACTCGCATTTCGAATGAATTAGGAGCAGGGAATCCAAAGGCAGCTCAAGGTATTGTTCGTGTTGTTGTGATTCTTGGAATTGTCGATGGGGTTATTGTCAGCACTTTCTTCGTTTGTTGTAGGCATATATTAGGATATGCTTATAGCAATGACAAGGAAGTTGTAGATTATGTTTCAGACATTGTTCCCATTCTTTGTGGATCTTTTACTGCAGATAGTCTAATAGGAGCTCTTTCCGGGATTGCAAGAGGTGGTGGATTTCAGCAAATAGGGGCTTATGTGAACCTTGGAGCCTATTATCTTGTGGGAGTTCCTTTGGCATTCTTATTGGGTTTTGTTCTACATTTCAATGCCAAGGGACTCTGGATGGGAAGTCTTACAGGGTCTGTTCTACAAGTGATTATTCTGACTGTTGTAACAGTGTTAACAGATTGGCAGAAAGAGGCAACGAAAGCAAGGGAGAGAATAGTTGAGAAGTCAATTAAAGTTCATAATGATTCAGTGATATGA

>Glyma18g53040.3   sequence type=CDS   gene model=Glyma18g53040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGATAAGGAGGAAGCAACACCATTGTTAAGAAAGAGTGAGGTGGCACCATTAGAGGATGATGATGCATTTTGTGTAGAGCTTAAAAGGGTAGGCTCCATGGCAGCTCCAATGCTGGCTGCGAATATGTGTCAGTACCTTCTACAAGTTGTGTCACTGATGATGGTGGGACATCTTGGGCTTCTTGTCTCATTCTCTGGGGTTGCAATTGCCATCTCTTTTGCTGAAGTTACCGGCTTTTGTGTTCTTATGGGAATGGCTGGTGCATTGGAAACTTTATGTGGCCAAACCTATGGTGCAGAAGAATTTACAGAGATTGGAAACTACACTTTTTGTGCAATTGTCACTTTGCTTTTGGTTTGTCTCCCCATATCTCTGCTGTGGATATTCATGGATAAAATACTATTGCTGTTTGGTCAAGACCCTGAAATTTCTCATGTAGCTCACAAGTACTGCATATGCTCCATCCCTGCACTGTATGGATTTGCTGTTCTTCAATGTCAGATCCGCTATTTCCAGACTCAGAGTATGATCTTTCCCATGGTTTTCAGCTCAATTGCGGTTCTGTGTTTGCATGTTCCTATTTGTTGGGGTCTGGTATTCAAATTGGGGCTGGGACATGTTGGAGCAGCATATGCTATTGGAATTTCATATTGGTTAAATGTCATTGGGCTTGGAATTTATATGAATTATTCTCCAGCATGTGAGAAGACCAAAATTGTGTTTTCATTTAATGCTTTACTAAGCATTCCAGAGTTCTGCCAATTTGCTATTCCTTCTGGGCTGATGTTTTGTTTTGAAATGTGGTCATTTGAGCTACTTACATTATTTGCTGGGCTTTTACCTAATCCACAACTTCAAACCTCAGTTCTTTCTGTCTGCCTTAACACAACAACATTGCACTACATCATTCCATATGCTGTTGGAGCTTCTGCAAGTACTCGCATTTCGAATGAATTAGGAGCAGGGAATCCAAAGGCAGCTCAAGGCATATATTAG

Predicted protein sequences of Glyma18g53040

Limit To All Plant Sequences

>Glyma18g53040.2   sequence type=predicted peptide   gene model=Glyma18g53040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAPMLAANMCQYLLQVVSLMMVGHLGLLVSFSGVAIAISFAEVTGFCVLMGMAGALETLCGQTYGAEEFTEIGNYTFCAIVTLLLVCLPISLLWIFMDKILLLFGQDPEISHVAHKYCICSIPALYGFAVLQCQIRYFQTQSMIFPMVFSSIAVLCLHVPICWGLVFKLGLGHVGAAYAIGISYWLNVIGLGIYMNYSPACEKTKIVFSFNALLSIPEFCQFAIPSGLMFCFEMWSFELLTLFAGLLPNPQLQTSVLSVCLNTTTLHYIIPYAVGASASTRISNELGAGNPKAAQGIVRVVVILGIVDGVIVSTFFVCCRHILGYAYSNDKEVVDYVSDIVPILCGSFTADSLIGALSGIARGGGFQQIGAYVNLGAYYLVGVPLAFLLGFVLHFNAKGLWMGSLTGSVLQVIILTVVTVLTDWQKEATKARERIVEKSIKVHNDSVI*

>Glyma18g53040.3   sequence type=predicted peptide   gene model=Glyma18g53040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMDKEEATPLLRKSEVAPLEDDDAFCVELKRVGSMAAPMLAANMCQYLLQVVSLMMVGHLGLLVSFSGVAIAISFAEVTGFCVLMGMAGALETLCGQTYGAEEFTEIGNYTFCAIVTLLLVCLPISLLWIFMDKILLLFGQDPEISHVAHKYCICSIPALYGFAVLQCQIRYFQTQSMIFPMVFSSIAVLCLHVPICWGLVFKLGLGHVGAAYAIGISYWLNVIGLGIYMNYSPACEKTKIVFSFNALLSIPEFCQFAIPSGLMFCFEMWSFELLTLFAGLLPNPQLQTSVLSVCLNTTTLHYIIPYAVGASASTRISNELGAGNPKAAQGIY*

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