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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G66730 | AT | Annotation by Michelle Graham. TAIR10: DNA LIGASE 6 | chr1:24884991-24891823 FORWARD LENGTH=1396 | SoyBase | E_val: 0 | ISS |
| GO:0006260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication | SoyBase | N/A | ISS |
| GO:0006266 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA ligation | SoyBase | N/A | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0006310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA recombination | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0051103 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA ligation involved in DNA repair | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003909 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA ligase activity | SoyBase | N/A | ISS |
| GO:0003910 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA ligase (ATP) activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG0967 | KOG | ATP-dependent DNA ligase I | JGI | ISS | |
| PTHR10459 | Panther | ATP-DEPENDENT DNA LIGASE FAMILY | JGI | ISS | |
| PF01068 | PFAM | ATP dependent DNA ligase domain | JGI | ISS | |
| PF04675 | PFAM | DNA ligase N terminus | JGI | ISS | |
| PF04679 | PFAM | ATP dependent DNA ligase C terminal region | JGI | ISS | |
| PF07522 | PFAM | DNA repair metallo-beta-lactamase | JGI | ISS | |
| UniRef100_G7KV95 | UniRef | Annotation by Michelle Graham. Best UniRef hit: DNA ligase n=1 Tax=Medicago truncatula RepID=G7KV95_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_G7KV95 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA ligase n=1 Tax=Medicago truncatula RepID=G7KV95_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma18g53005 not represented in the dataset |
Glyma18g53005 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g09960 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g292900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g53005.1 sequence type=CDS gene model=Glyma18g53005 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTCACAAACCCTAGACTCCACCAAACTCTACCTCACCGCCCTCAAAACCCTCCAATCCGAAGCCCCTCCCACACCCTCCCTCCCCCCACTCCCCTCTTCCATCCCTCACTCCAAACTCATCCCCCACACCCGCTTCCTCGTCGACGCCTTCCGCCACGCCGGCCCCCACTCCCACTCCTACTTCCTCTCCCACTTCCATTCCGACCACTACTCCGGCCTCTCCCCATCCTGGTCCCGCGGCGTCATCTTCTGCTCCCACACCACCGCCGCCCTCCTCCGCCGCATTCTTCACATCCCCGCCGCATTCATCGTCCCCCTCCCCCTCCGGCAGCCTCTCCGCATCGACGGCGCCCATGTCACCCTCCTCGACGCCAACCACTGCCCCGGCGCCGTCCAGTTCCTCTTCTCCGTCCCCCGTGCCACCGCCGATGCCGCCGCCCTCAGGTACGTCCACACCGGCGATTTTCGCTTTTGTAATTCCATGGTTTCCGAACCCGCCCTCGCCCCCTTCGTCGGTGCCGATGCGGTGTTTCTCGACACCACCTATTGTAATCCTAAGTTCGTGTTCCCCTCGCAAGAGGAGTCTATTGATTACGTTGCCAGTGTCGTGGAGAGCGTTGAGCGTGAGTGTGAGCATAATAGTAGTGACAAAGTTTTGTTTCTTGTTGCTACTTATGTCATTGGGAAGGAGAAGATTTTGCTTGAGCTTGCACGCAGGTTTAAGAGGAAGATACACGTCGATGCTAGGAAGATGGAGGTTTTGAGGGTTCTTGGGTATGGGGAGAATGGTGAATTTACTGAGGATGGGAAGGAGAGTAATATTCATGTTGTTGGGTGGAATTTGTTGGGGGAGACTTGGCCTTACTTTAGGCCTAATTTTGTTAGGATGAAGGAGGTTATGGCTGAGAGAGGGGGGTCATACTCCAAGGTTGTCGGCTTTGTTCCGACCGGATGGACCTATGAAGTGAAGCGGAATAGGTTTGCGGTCAAGTCCAAGGATTTGTTCAAGATTCATCTTGTGCCGTATAGTGAGCACTCAAACTATGATGAGCTCAGGGAGTATGTGAAGTTTTTGAAGCCAAAGCGGGTTGTTCCGACCGTGGGTTTGGATGTTGAGAAGAGTGACAGTAAACATGCTGACAAAATGAGGAAGTACTTTGCTAGGTTGGTTGATGAGACTGCCAACAAGCAGGATTTTTTAAGGGGTTTTCTTCGTGACCCTGGTGAGAAGGGTGAAGCGGGTTTCAAGGCTGAGAAGGTTGTTAGTGATGCTCTTGGACCAGGGCAAGACATGGAGGAAGAAGAAATCAATGCATTGAAGAAGACAGAAGGTGATATGGGTATTGGTCCAGTTGTGGCTGTGGGTTTGTCTTCTTTTATGGAAGAAACTTATGCACAAGATCCTACTTTGCTGAATGATGAAGAAAAGGAGAAAATAATTCAAGAACTGACTTTTTGTTTGCCCACATGGGTCACCCGAAACCAGTTGTTGGATCTGATCAGCATCTCAGGGAGCAATGTCATTGAAGCTGTTTCTAATTTCTATGAACGTGAAACTGAATTTCATGAGCAAGTGATATCTTGTCAAACTCCTGTTTCAACATCCAAGTGCTGCTCATTAAATGGTATGGATTCACTTGCAAAACCATGCCTCAATACAAACAACACTGGCAAAAATATTGACATTTTTCCAAGTCAAGACTCTAAATTAACTAACCTGAGGCATACAGTGCCTAGTCCCATTTCTCCTGCCAAAAGGAAGAGAAGTACTGACAGTAAGCAAAACAAAAAAGCCAAAGTCAAAGCAAAATCTGAACCAAGTGGTTCAAAGCAGGCCACAATTACAAGATTCTTCAGTAAAGTAATACCTGAGATGCCTGGTGGTACTCAATCTGATAATTCTGAACCAAAGCTTGACCAAAGCTCTAAAGTTGAAGACTTGTTGCCAACTGATGATGGACAAATGTACAAGGATGAAATTGATCAATTTATGCAAATAATAAATGGGACTGAGTCATTAAAAAAATATGCCATCACTATAATTGAGAAGACAAAAGGTGATATCAATAAGGCATTGGACATATATTACGGTAATTCTGAAAATCTTGGTGAAAAGCAAATATCAGTTCAAGTGGAGAGCAAAATTGATAGACCTGTAGTGAAGAAGCATGCATCAGAGGAATTGAGAATTGTACCTGATATTTTTGACCAGAAAGTCTTGAAAGATAATGTAGATGCTACTCACTTATCTCTACCACCTGAGAAATACAACCCTAAAGAGCATGCGTGTTGGAAAGATGGACAGCCTGCACCATATTTACATATTGCAAGAACCTTCAACCTGCTTGAGGGTGAGAAAGGAAGGATTAAAGCTACATCATTGCTATGCAATATGTTCAGAAGTTTGTTGGCCTTATCTCCAGCAGATGTGCTTCCTGCTGTGTATCTATGCACTAACAAAATTGCTGCAGACCATGAAAATAAGGAACTGAATATTGGTGGAAGTTTAGTCACTGCAGCACTTGAAGAGGCATGTGGAACAAATCGATTGAAAATAAGGGAGATGTTTAACAAATTTGGTGATCTTGGTGATGTTGCACAAGAGTGTCGTCAAACACAGAGATTGCTTGCACCACCTACACCACTTCTAATTAAGGATGTTTTCTCTGCACTACAAAAGATAAGTGTACAAACAGGCAGTCGAAGCACATCTCGGAAGAAAGGCATCATTGTTCATCTCATGCGTTCCTGCCGTGAGAAGGAGATGAAGTTTCTTGTTCGGACCTTGGTCAGGAACCTAAGGATTGGGGCAATGCTTAGAACTGTTTTGCCTGCATTGGCTCATGCTGTTGCTATGAATTCTTGCCCTACTTTGCACCAAGAAGGAACTGCAGAAAATATAAAGGAGAAACTACAGGTTCTTTCTATGGCAGTTGTTGAAGCATATAACATACTGCCAAATTTAGATCTCATAGTTCCATCTCTCATGAACAAAGGCATTGATTTTTCAGTTTCAAGTTTATCAATGGTTCCAGGAATCCCTATTAAGCCTATGCTAGCAAAGATCACCAATGGTATTCCCCAAGCATTGAAGCTATTTGAAAATAAAGCATTTACATGTGAATATAAGTATGATGGTCAGCGAGCTCAAATTCACAAATTAGTTGATGGATCAATTCGTGTTTTTTCAAGAAATGGGGACGAATCAACTTCAAGATTTCCTGATCTGATTGACATAATTAAGGAATCCAGCAAGCCGGTTGCATCAACTTTCATAATGGATGCTGAAATTGTTGGTATTGACAGAAAAAATGGATATAGGATTATGTCTTTCCAGGAGCTATCTTCACGTGGAAGAGGTGGCAAAGATACATTAGTTACTTCAGAGAGCATTAAGGTGGATATTTGCATCTTTGTCTTTGATATCATGTTCGCAAATGGAGAGCAGTTATTGGGTTTTCCTCTCCGCCTTAGACGAAAGTATCTGAAGGATTTGTTCTATGATGAGAAACCTGGGTATTTTGAATATGCAAAAGAAACAACTGTTGAAGCAGATGATGCTTGCTTAACCTGTGAAGCCACATTAACTAAGATAAATGCTTTCCTGGAAGATGCTCTTCGCTCTTCATGTGAAGGAATTATGGTGAAAACATTGGATGTTGATGCTGGGTATTCTCCATCAAAGCGTTCTGACAAATGGCTAAAAGTCAAGCGAGATTATGTGGAAGGATTAAATGATACTCTTGATTTAGTACCGATTGGTGCTTGGCATGGAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTTATGGCATGTTTCAATCCTGAAACAGAGGAGTATCAAAGTGTATGTCGTGTGATGTCTGGATTCTCAGATTCATTTTACATAGAGATGAAACAATTCTTCTCTGGGGACAAAGTCTTGTCCAAAAAACCACCATATTATCAAACAAGAGAGGCACCAGACATGTGGTTTTGTCCACAAGTTGTTTGGGAAATAAGAGGAGCAGATTTTACTGTATCCCCAGTTCATCATGCTGCCATTGGTTTAGTTCATCCATCTCGAGGCATCTCAATCAGATTTCCAAGATTTATTAGTTGTGTCTCAGACAGAAGCCCAGAAGAATGTAGCACAGCTGCCGATATAGGTGAAATGTTTCATTCTCAGACTCGGAAGATGGATATCACAACTGGAGACTGA
>Glyma18g53005.1 sequence type=predicted peptide gene model=Glyma18g53005 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDSQTLDSTKLYLTALKTLQSEAPPTPSLPPLPSSIPHSKLIPHTRFLVDAFRHAGPHSHSYFLSHFHSDHYSGLSPSWSRGVIFCSHTTAALLRRILHIPAAFIVPLPLRQPLRIDGAHVTLLDANHCPGAVQFLFSVPRATADAAALRYVHTGDFRFCNSMVSEPALAPFVGADAVFLDTTYCNPKFVFPSQEESIDYVASVVESVERECEHNSSDKVLFLVATYVIGKEKILLELARRFKRKIHVDARKMEVLRVLGYGENGEFTEDGKESNIHVVGWNLLGETWPYFRPNFVRMKEVMAERGGSYSKVVGFVPTGWTYEVKRNRFAVKSKDLFKIHLVPYSEHSNYDELREYVKFLKPKRVVPTVGLDVEKSDSKHADKMRKYFARLVDETANKQDFLRGFLRDPGEKGEAGFKAEKVVSDALGPGQDMEEEEINALKKTEGDMGIGPVVAVGLSSFMEETYAQDPTLLNDEEKEKIIQELTFCLPTWVTRNQLLDLISISGSNVIEAVSNFYERETEFHEQVISCQTPVSTSKCCSLNGMDSLAKPCLNTNNTGKNIDIFPSQDSKLTNLRHTVPSPISPAKRKRSTDSKQNKKAKVKAKSEPSGSKQATITRFFSKVIPEMPGGTQSDNSEPKLDQSSKVEDLLPTDDGQMYKDEIDQFMQIINGTESLKKYAITIIEKTKGDINKALDIYYGNSENLGEKQISVQVESKIDRPVVKKHASEELRIVPDIFDQKVLKDNVDATHLSLPPEKYNPKEHACWKDGQPAPYLHIARTFNLLEGEKGRIKATSLLCNMFRSLLALSPADVLPAVYLCTNKIAADHENKELNIGGSLVTAALEEACGTNRLKIREMFNKFGDLGDVAQECRQTQRLLAPPTPLLIKDVFSALQKISVQTGSRSTSRKKGIIVHLMRSCREKEMKFLVRTLVRNLRIGAMLRTVLPALAHAVAMNSCPTLHQEGTAENIKEKLQVLSMAVVEAYNILPNLDLIVPSLMNKGIDFSVSSLSMVPGIPIKPMLAKITNGIPQALKLFENKAFTCEYKYDGQRAQIHKLVDGSIRVFSRNGDESTSRFPDLIDIIKESSKPVASTFIMDAEIVGIDRKNGYRIMSFQELSSRGRGGKDTLVTSESIKVDICIFVFDIMFANGEQLLGFPLRLRRKYLKDLFYDEKPGYFEYAKETTVEADDACLTCEATLTKINAFLEDALRSSCEGIMVKTLDVDAGYSPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGWYSPFLMACFNPETEEYQSVCRVMSGFSDSFYIEMKQFFSGDKVLSKKPPYYQTREAPDMWFCPQVVWEIRGADFTVSPVHHAAIGLVHPSRGISIRFPRFISCVSDRSPEECSTAADIGEMFHSQTRKMDITTGD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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