Glyma18g52940 - SoyBase

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Report for Sequence Feature Glyma18g52940

Feature Type:	gene_model
Chromosome:	Gm18
Start:	61370101
stop:	61372838
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g52940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G36730	AT	Annotation by Michelle Graham. TAIR10: Translation initiation factor IF2/IF5 \| chr1:13898706-13900025 REVERSE LENGTH=439	SoyBase	E_val: 3.00E-178	ISS
GO:0006413	GO-bp	Annotation by Michelle Graham. GO Biological Process: translational initiation	SoyBase	N/A	ISS
GO:0006446	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of translational initiation	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity	SoyBase	N/A	ISS
KOG2767	KOG	Translation initiation factor 5 (eIF-5)	JGI		ISS
PTHR23001	Panther	EUKARYOTIC TRANSLATION INITIATION FACTOR	JGI		ISS
PTHR23001:SF1	Panther	EUKARYOTIC TRANSLATION INITIATION FACTOR 5	JGI		ISS
PF01873	PFAM	Domain found in IF2B/IF5	JGI		ISS
PF02020	PFAM	eIF4-gamma/eIF5/eIF2-epsilon	JGI		ISS
UniRef100_I1N583	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N583_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_P48724	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 5 n=1 Tax=Phaseolus vulgaris RepID=IF5_PHAVU	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g52940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g52940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g292300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g52940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g52940

Limit To All Plant Sequences

>Glyma18g52940.1   sequence type=CDS   gene model=Glyma18g52940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTACAGAACATTGGTGCTGCAAACAGTGATGATGCCTTCTACAGGTATAAGATGCCTAGGATGATTACCAAAATTGAGGGCAGAGGTAATGGCATCAAAACTAATGTTGTCAATATGGTTGACATTGCAAAGGCACTGGCAAGGCCTGCGTCTTACACGACCAAGTATTTTGGTTGTGAGCTTGGGGCCCAGTCGAAATTTGATGAGAAGACCGGCACTTCTCACGTCAATGGAGCACACGATACTGCTAAGCTTGCTGGCCTTCTTGAGAACTTCATTAAGAAATATGTCCAGTGTTATGGTTGTGGAAATCCTGAAACTGAGATCATAATTACTAAGAATCAAATGATCCAGCTGAAATGCGCAGCTTGTGGTTTTGTGTCTGATGTTGATATGAGAGACAAGCTGACTACCTTCATCATTAAGAACCCTCCAGAAGTTAAGAAAGGATCCAAAGACAAGAAGGCCATGAGGAGAGCTGAGAAGGAGAGACTGAAGGAAGGTGAATTAGCTGATGAGGAACAGAAGAAAGTGAAGAAAGAGGTTAAGAAGAAAGGCTCTTCATCTTCTAAGGATGGCACTAAATCCACCTCTTCAAAGAAGAAAGCAAGTGGCTCTGATGAAGACCGCACTTCACCTACTCACAGTCAAATTGATGAGAAAGAGGAGGCTCTAGATGAGGATGATGACGATGATGTGCAATGGCAGACAGATACGTCACTTGATGCTGCTCGTCAACGTATCCAAGAACAATTAAGTGCTGTGACAGCTGATATGGTTATGCTTTCTACAGATGAACCAGAGAAGAAAAAAGAAGCAAGTAATGGAAATGATGGTTCTCAGAATGGTAACTCAATGCACTGCAGGACCTTGGTTGGTGAAGTGAAAGCAAATTTGAAGAAAGGTGTTGGAGCAAATGAATTGCTGTCGCAACTTGCAGCACATCCTGTACCTGCTCAAGAAAAGATGAGTGCTCTGGTTGAAGCTTTGTTCGAGGGAACTGAGAAAGGTTTTGCTAAAGAAGCTGATAAAAAGAAGAACTACTTTTCTGTTGCTGTTGCGGATGAGGGATCCCAGCCGTTGTTGCTTCATGCTATTGAAGAGTTTTCTTGCAAGTCTACTTCAAATGCTTTGAAGGAGGTTGCCCTGGTTCTAAAGGCACTCTACGATGCTGATGTGTTAGAGGAAGAACACATAGTGCAGTGGTATCAAAAGGGACTGAAGGGTGATAACAAGAACTCTAGGATTTGGAAGAATGCTCAACCTTTCATTGATTGGCTTCAGAATGCAGAATCAGAAACCGAGGAAGAATAA

Predicted protein sequences of Glyma18g52940

Limit To All Plant Sequences

>Glyma18g52940.1   sequence type=predicted peptide   gene model=Glyma18g52940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALQNIGAANSDDAFYRYKMPRMITKIEGRGNGIKTNVVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKNQMIQLKCAACGFVSDVDMRDKLTTFIIKNPPEVKKGSKDKKAMRRAEKERLKEGELADEEQKKVKKEVKKKGSSSSKDGTKSTSSKKKASGSDEDRTSPTHSQIDEKEEALDEDDDDDVQWQTDTSLDAARQRIQEQLSAVTADMVMLSTDEPEKKKEASNGNDGSQNGNSMHCRTLVGEVKANLKKGVGANELLSQLAAHPVPAQEKMSALVEALFEGTEKGFAKEADKKKNYFSVAVADEGSQPLLLHAIEEFSCKSTSNALKEVALVLKALYDADVLEEEHIVQWYQKGLKGDNKNSRIWKNAQPFIDWLQNAESETEEE*

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