Glyma18g52931 - SoyBase

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Report for Sequence Feature Glyma18g52931

Feature Type:	gene_model
Chromosome:	Gm18
Start:	61366730
stop:	61369062
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g52931

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G01275	AT	Annotation by Michelle Graham. TAIR10: RING/FYVE/PHD zinc finger superfamily protein \| chr2:142610-143809 REVERSE LENGTH=259	SoyBase	E_val: 6.00E-58	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR23012	Panther	MEMBRANE ASSOCIATED RING FINGER	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
PF12428	PFAM	Protein of unknown function (DUF3675)	JGI		ISS
UniRef100_G7KVA2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase MARCH2 n=1 Tax=Medicago truncatula RepID=G7KVA2_MEDTR	SoyBase	E_val: 1.00E-96	ISS
UniRef100_UPI000233DFAE	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DFAE related cluster n=1 Tax=unknown RepID=UPI000233DFAE	SoyBase	E_val: 9.00E-164	ISS

Expression Patterns of Glyma18g52931

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g52931 not represented in the dataset	Glyma18g52931 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g52931

Paralog	Evidence	Comments
Glyma02g10030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g52931 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g292200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g52931

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g52931

Limit To All Plant Sequences

>Glyma18g52931.2   sequence type=transcript   gene model=Glyma18g52931   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGCTGAGAGGATTAGAGAACAGTTTGTTTTGTTGGTTGGTAGGCTACATACTTAATCTTCCCTTGAACCTGTTATTGAGATCTAAAACAAACAACTCTGTGGTCAAACCATGTTGATATGATTTAGATGGATGAGCAAATTATGTCATCTCCTAATATATTGGTACAGTGTCGAATATGCCACGATGAGGATGAAGAGTCCAACATGGACACACCTTGTTCTTGTTGTGGCACATTGAAGCAACTCAAGCCCGGCTATACTGCACCTCCATTGCCTCCTCTATTACATTATGGTGGTTCTCCAATAAATTTTGGATGGAACTGGGAGATTTCAAGAAGGGATTTTCAAAACCACCAGTTCATAGCGATGTTTAATGCTAATCGTGAATTCCTAGACCTTGACTTTGCATATTCATCAGCACCTTCTACAAGAAGCTTGATATTTTTCCGCATTATTGCCATTATTTTTATTGTTCTTCTTCTTTTACGCCTTACACTTCCAATCATATTTATACTCAGTGGAGCAAGAGCATATTCATTGGCTGTGTTTATGCTAGTAGTGTTGAGAATCATTGGAATGATTGTACCAGTATATATAATGGTTAAAGCTATTATTGCAATGCAACAGTTTCAATATCAGACACTCGATATTCAGCATTCCCCTATGCAAGCACACGAGGAAAATGAAATAGGACAATCTCAGTTGCGTGTCATTCATATTCAGTGATTCCATGGTCAACTTCGGATGAAGAAATTGTTTATAACTTATGATGTTGAAAAGATAAATCAGAGTGAAGTCGTAATTATTTTTTATGTACAGGAAGGGTGAAAACAGACCAAATTTAAGAGAAATCTGATATAATTACTCATCTGTGAAAGTCCATCAATGTAAGTAGATGCTGTATATACTACAATATACACGACAGCATCTAATTACATTGTTATCATCAGTTGTTACCAGAAAGAAAAGAATGAGAAAGTATATACATTGTCATCACCGGTTGTACCTAGAAAGAAAAGAATGAGAAAGTATATAAATTGTCATCACCATTTGCTAACATCAAAATAAAATGGTTACTTATTATCTATTTTCTTAA

Coding sequences of Glyma18g52931

Limit To All Plant Sequences

>Glyma18g52931.1   sequence type=CDS   gene model=Glyma18g52931   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGAGCAAATTATGTCATCTCCTAATATATTGGTACAGTGTCGAATATGCCACGATGAGGATGAAGAGTCCAACATGGACACACCTTGTTCTTGTTGTGGCACATTGAAGTATGCACACAAAAAATGTGTTCAAAGATGGTGCAACGAGAAGGGTGATACTATATGTGAAATTTGCCAGCGGCAACTCAAGCCCGGCTATACTGCACCTCCATTGCCTCCTCTATTACATTATGGTGGTTCTCCAATAAATTTTGGATGGAACTGGGAGATTTCAAGAAGGGATTTTCAAAACCACCAGTTCATAGCGATGTTTAATGCTAATCGTGAATTCCTAGACCTTGACTTTGCATATTCATCAGCACCTTCTACAAGAAGCTTGATATTTTTCCGCATTATTGCCATTATTTTTATTGTTCTTCTTCTTTTACGCCTTACACTTCCAATCATATTTATACTCAGTGGAGCAAGAGCATATTCATTGGCTGTGTTTATGCTAGTAGTGTTGAGAATCATTGGAATGATTGTACCAGTATATATAATGGTTAAAGCTATTATTGCAATGCAACAGTTTCAATATCAGACACTCGATATTCAGCATTCCCCTATGCAAGCACACGAGGAAAATGAAATAGGACAATCTCAGTTGCGTGTCATTCATATTCAGTGA

>Glyma18g52931.2   sequence type=CDS   gene model=Glyma18g52931   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGAGCAAATTATGTCATCTCCTAATATATTGGTACAGTGTCGAATATGCCACGATGAGGATGAAGAGTCCAACATGGACACACCTTGTTCTTGTTGTGGCACATTGAAGCAACTCAAGCCCGGCTATACTGCACCTCCATTGCCTCCTCTATTACATTATGGTGGTTCTCCAATAAATTTTGGATGGAACTGGGAGATTTCAAGAAGGGATTTTCAAAACCACCAGTTCATAGCGATGTTTAATGCTAATCGTGAATTCCTAGACCTTGACTTTGCATATTCATCAGCACCTTCTACAAGAAGCTTGATATTTTTCCGCATTATTGCCATTATTTTTATTGTTCTTCTTCTTTTACGCCTTACACTTCCAATCATATTTATACTCAGTGGAGCAAGAGCATATTCATTGGCTGTGTTTATGCTAGTAGTGTTGAGAATCATTGGAATGATTGTACCAGTATATATAATGGTTAAAGCTATTATTGCAATGCAACAGTTTCAATATCAGACACTCGATATTCAGCATTCCCCTATGCAAGCACACGAGGAAAATGAAATAGGACAATCTCAGTTGCGTGTCATTCATATTCAGTGA

Predicted protein sequences of Glyma18g52931

Limit To All Plant Sequences

>Glyma18g52931.1   sequence type=predicted peptide   gene model=Glyma18g52931   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDEQIMSSPNILVQCRICHDEDEESNMDTPCSCCGTLKYAHKKCVQRWCNEKGDTICEICQRQLKPGYTAPPLPPLLHYGGSPINFGWNWEISRRDFQNHQFIAMFNANREFLDLDFAYSSAPSTRSLIFFRIIAIIFIVLLLLRLTLPIIFILSGARAYSLAVFMLVVLRIIGMIVPVYIMVKAIIAMQQFQYQTLDIQHSPMQAHEENEIGQSQLRVIHIQ*

>Glyma18g52931.2   sequence type=predicted peptide   gene model=Glyma18g52931   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDEQIMSSPNILVQCRICHDEDEESNMDTPCSCCGTLKQLKPGYTAPPLPPLLHYGGSPINFGWNWEISRRDFQNHQFIAMFNANREFLDLDFAYSSAPSTRSLIFFRIIAIIFIVLLLLRLTLPIIFILSGARAYSLAVFMLVVLRIIGMIVPVYIMVKAIIAMQQFQYQTLDIQHSPMQAHEENEIGQSQLRVIHIQ*

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