Glyma18g52920 - SoyBase

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Report for Sequence Feature Glyma18g52920

Feature Type:	gene_model
Chromosome:	Gm18
Start:	61357289
stop:	61357923
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g52920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G01300	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15010.1); Has 73 Blast hits to 73 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr2:151221-151691 REVERSE LENGTH=156	SoyBase	E_val: 2.00E-21	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1N581	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N581_SOYBN	SoyBase	E_val: 6.00E-105	ISS

Expression Patterns of Glyma18g52920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g52920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g292100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g52920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g52920

Limit To All Plant Sequences

>Glyma18g52920.1   sequence type=CDS   gene model=Glyma18g52920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCTACAAATCTGGGATGCTGCAAGCTTTCATGGGGGTCAGTGATTTCCAAGAACGTTAACCTAACAAGCCAGAAGCGTATGGTTAGAAGGAGGTGCGAAAGTGGGGATGGTTGGGGGAGATTGGTTGATGAGGGCATGATAGTGCTGCGTTGGCGTATAAAGGAGATGAAGAGGATGGAGGAGGCGAATCAAGAGGTTCCTTCTCATTGGATGGAGTGGGAGAAGCAGTACTATGCTCATTATTATGACCAACATGTTTTTCATGCCATGGAGTTATTGCAGTCTTATTTGATGAGCCTCAGGCTCAGACCCATTGTAGCATTAGGGGTGTTAGTCCTTGTATCTTTGAGTGTGCTCATGTGTTCCGGGGTGGGCTTCTTTCATGCCCTAGAGGTAGCAAATAGCCTCGTATCTTACTTTTACTCATCAAGGGAATTAATATAA

Predicted protein sequences of Glyma18g52920

Limit To All Plant Sequences

>Glyma18g52920.1   sequence type=predicted peptide   gene model=Glyma18g52920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEATNLGCCKLSWGSVISKNVNLTSQKRMVRRRCESGDGWGRLVDEGMIVLRWRIKEMKRMEEANQEVPSHWMEWEKQYYAHYYDQHVFHAMELLQSYLMSLRLRPIVALGVLVLVSLSVLMCSGVGFFHALEVANSLVSYFYSSRELI*

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