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Report for Sequence Feature Glyma18g52880

Feature Type:gene_model
Chromosome:Gm18
Start:61329096
stop:61330796
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g52880
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G17450AT Annotation by Michelle Graham. TAIR10: Heavy metal transport/detoxification superfamily protein | chr5:5755386-5756743 FORWARD LENGTH=149 SoyBaseE_val: 1.00E-58ISS
GO:0030001GO-bp Annotation by Michelle Graham. GO Biological Process: metal ion transport SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0046872GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion binding SoyBaseN/AISS
KOG1603 KOG Copper chaperone JGI ISS
PTHR22814Panther COPPER TRANSPORT PROTEIN ATOX1-RELATED JGI ISS
PTHR22814:SF14Panther COPPER CHAPERONE-RELATED JGI ISS
PF00403PFAM Heavy-metal-associated domain JGI ISS
UniRef100_G7KW42UniRef Annotation by Michelle Graham. Most informative UniRef hit: Metal ion binding protein n=1 Tax=Medicago truncatula RepID=G7KW42_MEDTR SoyBaseE_val: 2.00E-82ISS
UniRef100_I1N577UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N577_SOYBN SoyBaseE_val: 6.00E-103ISS

Expression Patterns of Glyma18g52880
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g52880
ParalogEvidenceComments
Glyma02g10090 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g52880 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g291700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g52880
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g52880
>Glyma18g52880.1   sequence type=CDS   gene model=Glyma18g52880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCACTTAACTACATCATCTCCAACTTTTGCACAGTTCCCAGCAAAAAGATCAAAACAATGCAGACAGTTGAGATCAAAGTCAAAATGGACTGTGATGGCTGTGAACGAAAAGTCAGAAATGCAGTGGCTACAATCAAAGGAGTGAAATCTGTGGAGATAAACAGAAAGCAAAGCAGGGTGACAGTGAATGGTTGCGTTGATCCAAACAAGGTGTTGAATAGGGTAAAGAGAACCGGGAAGAAAAAAGCTGAATTTTGGCCTTATGTTCCACAGCATGTGGTCACATATCCTCATGCCTCCGGCGTCTATGACAAAAGGGCACCCGGCGGCTATGTTCGAAACGTCCAAACATTTGCAGCATCAGCTGATACAGAAGAGAAATTTATGTCCCTTTTCAGTGAAGACAACGTAAATGCATGCTCCATCATGTAA
Predicted protein sequences of Glyma18g52880
>Glyma18g52880.1   sequence type=predicted peptide   gene model=Glyma18g52880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGALNYIISNFCTVPSKKIKTMQTVEIKVKMDCDGCERKVRNAVATIKGVKSVEINRKQSRVTVNGCVDPNKVLNRVKRTGKKKAEFWPYVPQHVVTYPHASGVYDKRAPGGYVRNVQTFAASADTEEKFMSLFSEDNVNACSIM*






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