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A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT3G55430 | AT | Annotation by Michelle Graham. TAIR10: O-Glycosyl hydrolases family 17 protein | chr3:20549806-20552004 REVERSE LENGTH=449 | SoyBase | E_val: 0 | ISS |
GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
GO:0004553 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds | SoyBase | N/A | ISS |
GO:0043169 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cation binding | SoyBase | N/A | ISS |
PTHR16631 | Panther | GLUCAN 1,3-BETA-GLUCOSIDASE-RELATED | JGI | ISS | |
PF00332 | PFAM | Glycosyl hydrolases family 17 | JGI | ISS | |
PF07983 | PFAM | X8 domain | JGI | ISS | |
UniRef100_I1N575 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N575_SOYBN | SoyBase | E_val: 0 | ISS |
UniRef100_Q9M4A9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Beta-1,3 glucanase n=1 Tax=Pisum sativum RepID=Q9M4A9_PEA | SoyBase | E_val: 0 | ISS |
Glyma18g52860 not represented in the dataset |
Glyma18g52860 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.18g291500 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g52860.2 sequence type=transcript gene model=Glyma18g52860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GACCACGGTCCTAAAAAATAGTTCACAATCCCTATCCCTCCTCTCTTGTTATATATAGACACAAACGTAAGACCTTTTGTTTCTTACTTGTAATAATTCTTATAACACAACACAACCCATGGCCACCACCTCCGCATTCCTCCTCCTTCCCCTCCTCCTGCTGCTCCACCTCGCCATCGCCGCTCACGGCATCGGCATCAACTACGGCACGCTCGGCGACAACCTTCCACCGCCCGCGGCGGTGGCGAACTTCCTGAAGACGAAGACGACCATCGACCGCGTGAAGATCTACGACGTGAACCCGGACATCCTGCGGGCCTTCGCCGGCAGCGGCATCTCCGTGACGGTGACCGCCCCCAACGGCGACATCGCCGCCTTAACCAAAATCGACTCGGCGAGGCAGTGGGTGGCGACGCACATCAAACCCTTTCACCCTCAGACCAAAATTAATTACATCCTCGTCGGCAGCGAGGTTCTCCACTGGGGCGACACCAACATGATCCGCGGCCTCGTCCCTGCCATGAGAACCCTTCACTCAGCCCTCCTAGCCGAGGGCATAACCGACATTAAGGTAACCACTGCTCACTCTCTGGCGATAATGCGGTCATCGATACCACCAAGTATGGGCAGGTTCAGGCCCGGGTACGCAAAGCACGTGTTGGGCCCAATGCTGAAGTTTCTGAGGGAGACGAGAACACCCTTGATGGTGAACCCGTACCCGTACTTCGGTTACAACGGGAAAAACGTGAACTTTCTTCTGTTCAGGCCCAACCGAGGCTTGTACGACAGGTACACGAAGAGGAGTTACACGAACCAGTTCGACGCTCTGATGGACGCGGTGCACTCGGCGATGAATGCTTTGGGGTACGGTGACGTGGACATCGCCGTCGGCGAAACGGGGTGGCCCTCCGTTTGCGACGGTTGGGACGCGTGCAGCGTGGCGAACGCGCAGTCCTTTAACAGGGAACTGGTGAAGCACCTGGCGACGGGGAAGGGAACGCCATTGATGCCAAACCGAAGCTTCGAGACTTACATCTTCGCGCTCTTCAATGAGAACCAAAAGCCCGGCCCAATAGCCGAACGCAACTGGGGCCTCTTCCAACCTGATTTCACTCCCGTCTACGACTCCGGAATCCTCCGCAACGGACAGGCAGTTACACCTGCAAGACCTACACCTACAAGACCTGCAGCTCCTACAAAACCTGCACCTGCAGTAGGAGGTCAAAAATGGTGTGTGCCAAAGGCAGATGCTAGCAACCAAGCTTTGCAAGCAAACATAAACTATGTGTGCAGCCAAGGAGTTGATTGTAGGCCAATTCAACCAGGAGGAGATTGCTTTGCAGCCAACAACGTTAAGGCTCTTGCCACTTATGCCATGAATGCCTACTACCAGGCCAATGGGCGCCATGATTTCAACTGTGACTTCTCTCAAACTGGTGTTATTACTACTACTAATCCAAGTGAGTCTCACCACCATAGCAAAACTTGAATGCAGTCTTATGTGTTTCTGATCTTGTTCTTTAATCAGAATTTTAGTTT >Glyma18g52860.3 sequence type=transcript gene model=Glyma18g52860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GACCACGGTCCTAAAAAATAGTTCACAATCCCTATCCCTCCTCTCTTGTTATATATAGACACAAACGTAAGACCTTTTGTTTCTTACTTGTAATAATTCTTATAACACAACACAACCCATGGCCACCACCTCCGCATTCCTCCTCCTTCCCCTCCTCCTGCTGCTCCACCTCGCCATCGCCGCTCACGGCATCGGCATCAACTACGGCACGCTCGGCGACAACCTTCCACCGCCCGCGGCGGTGGCGAACTTCCTGAAGACGAAGACGACCATCGACCGCGTGAAGATCTACGACGTGAACCCGGACATCCTGCGGGCCTTCGCCGGCAGCGGCATCTCCGTGACGGTGACCGCCCCCAACGGCGACATCGCCGCCTTAACCAAAATCGACTCGGCGAGGCAGTGGGTGGCGACGCACATCAAACCCTTTCACCCTCAGACCAAAATTAATTACATCCTCGTCGGCAGCGAGGTTCTCCACTGGGGCGACACCAACATGATCCGCGGCCTCGTCCCTGCCATGAGAACCCTTCACTCAGCCCTCCTAGCCGAGGGCATAACCGACATTAAGGTAACCACTGCTCACTCTCTGGCGATAATGCGGTCATCGATACCACCAAGTATGGGCAGGTTCAGGCCCGGGTACGCAAAGCACGTGTTGGGCCCAATGCTGAAGTTTCTGAGGGAGACGAGAACACCCTTGATGGTGAACCCGTACCCGTACTTCGGTTACAACGGGAAAAACGTGAACTTTCTTCTGTTCAGGCCCAACCGAGGCTTGTACGACAGGTACACGAAGAGGAGTTACACGAACCAGTTCGACGCTCTGATGGACGCGGTGCACTCGGCGATGAATGCTTTGGGGTACGGTGACGTGGACATCGCCGTCGGCGAAACGGGGTGGCCCTCCGTTTGCGACGGTTGGGACGCGTGCAGCGTGGCGAACGCGCAGTCCTTTAACAGGGAACTGGTGAAGCACCTGGCGACGGGGAAGGGAACGCCATTGATGCCAAACCGAAGCTTCGAGACTTACATCTTCGCGCTCTTCAATGAGAACCAAAAGCCCGGCCCAATAGCCGAACGCAACTGGGGCCTCTTCCAACCTGATTTCACTCCCGTCTACGACTCCGGAATCCTCCGCAACGGACAGTTTTTCTCTCCAAGATGGAGTACAATACACAATTCGAGATGCACCGGCCTGTAAAGCCGTCGATTATTGTGAACCTTTTGTGGTTGATAATTTAAATAGCACCCCCCTCATCTAACGGTTGAGATAGAGAGGTGCCCCTTGTTGCTTTTTAGAAGGAGAATTTGGTCTAGTTCGTCACATGGCCTGTTTACTATCTAACAATTATCAAATTCTAACAAACGGTCATATGGGCACACTTTTCTTAGCTTTTAGAAAATCTTGATTAATTCATAAAAGAATTTGATTATAGTAATAAGATATTGTATTTTTTTTAATTAGAAATTTTTGAGTAACTTTCTCTTGAGTGATTGGAACTTTTTCTTTTTACCAATGAATGATTGGAACTTGGTAGTTAGTAGTGCTAAATTGGGTTAATGGATTACAAAATGTGTCTTGTTGTAAAGGAGAAATCCATAGTAATTTGGAGCAATCAGATCAGAAATTATGCTTGGTATCACTTTTAAGGTATTAGTTATTATAAACACCACCAACAAAGGGCTACATAATTATCATCCACGACAATTTTTAATTGGTTGCACATGTGAAAATCCTTGAGACTGTTTGTACGTATGTAGTATTTGCTTAATAATATTACATTTCTACTCAGATAAATTTCTTACCATCATGTAATGTTGTTGTTGAGACATTTTTGAATGAATAAATGCAGGCAGTTACACCTGCAAGACCTACACCTACAAGACCTGCAGCTCCTACAAAACCTGCACCTGCAGTAGGAGGTCAAAAATGGTGTGTGCCAAAGGCAGATGCTAGCAACCAAGCTTTGCAAGCAAACATAAACTATGTGTGCAGCCAAGGAGTTGATTGTAGGCCAATTCAACCAGGAGGAGATTGCTTTGCAGCCAACAACGTTAAGGCTCTTGCCACTTATGCCATGAATGCCTACTACCAGGCCAATGGGCGCCATGATTTCAACTGTGACTTCTCTCAAACTGGTGTTATTACTACTACTAATCCAAGCCATGATAAATGCAAAATCTGAGCATGTTTATTTAAAGGTTATAATCAGAGGCAAGAAAGGAAGATAGAGAAAAGCCCATTGTCATGGTGTCAATGTGGCTTAGTGGTATCTGTGACTCTGAGATTATGCATTCATGTACTCAAAATTATTTAGTTTGTATATTGTTCTGGAAGAAGAATGTTGGCATGGTATTTCGTGCCTTGACTAGATATGATGGTCCATCGACTACTAAATAGGAACTTTGCATTAATATTAACATCATTCGTAGCTGAATCAGTGTTGGTGGTTCCTAATTT
>Glyma18g52860.1 sequence type=CDS gene model=Glyma18g52860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCACCACCTCCGCATTCCTCCTCCTTCCCCTCCTCCTGCTGCTCCACCTCGCCATCGCCGCTCACGGCATCGGCATCAACTACGGCACGCTCGGCGACAACCTTCCACCGCCCGCGGCGGTGGCGAACTTCCTGAAGACGAAGACGACCATCGACCGCGTGAAGATCTACGACGTGAACCCGGACATCCTGCGGGCCTTCGCCGGCAGCGGCATCTCCGTGACGGTGACCGCCCCCAACGGCGACATCGCCGCCTTAACCAAAATCGACTCGGCGAGGCAGTGGGTGGCGACGCACATCAAACCCTTTCACCCTCAGACCAAAATTAATTACATCCTCGTCGGCAGCGAGGTTCTCCACTGGGGCGACACCAACATGATCCGCGGCCTCGTCCCTGCCATGAGAACCCTTCACTCAGCCCTCCTAGCCGAGGGCATAACCGACATTAAGGTAACCACTGCTCACTCTCTGGCGATAATGCGGTCATCGATACCACCAAGTATGGGCAGGTTCAGGCCCGGGTACGCAAAGCACGTGTTGGGCCCAATGCTGAAGTTTCTGAGGGAGACGAGAACACCCTTGATGGTGAACCCGTACCCGTACTTCGGTTACAACGGGAAAAACGTGAACTTTCTTCTGTTCAGGCCCAACCGAGGCTTGTACGACAGGTACACGAAGAGGAGTTACACGAACCAGTTCGACGCTCTGATGGACGCGGTGCACTCGGCGATGAATGCTTTGGGGTACGGTGACGTGGACATCGCCGTCGGCGAAACGGGGTGGCCCTCCGTTTGCGACGGTTGGGACGCGTGCAGCGTGGCGAACGCGCAGTCCTTTAACAGGGAACTGGTGAAGCACCTGGCGACGGGGAAGGGAACGCCATTGATGCCAAACCGAAGCTTCGAGACTTACATCTTCGCGCTCTTCAATGAGAACCAAAAGCCCGGCCCAATAGCCGAACGCAACTGGGGCCTCTTCCAACCTGATTTCACTCCCGTCTACGACTCCGGAATCCTCCGCAACGGACAGGCAGTTACACCTGCAAGACCTACACCTACAAGACCTGCAGCTCCTACAAAACCTGCACCTGCAGTAGGAGGTCAAAAATGGTGTGTGCCAAAGGCAGATGCTAGCAACCAAGCTTTGCAAGCAAACATAAACTATGTGTGCAGCCAAGGAGTTGATTGTAGGCCAATTCAACCAGGAGGAGATTGCTTTGCAGCCAACAACGTTAAGGCTCTTGCCACTTATGCCATGAATGCCTACTACCAGGCCAATGGGCGCCATGATTTCAACTGTGACTTCTCTCAAACTGGTGTTATTACTACTACTAATCCAAGCCATGATAAATGCAAAATCTGA >Glyma18g52860.2 sequence type=CDS gene model=Glyma18g52860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCACCACCTCCGCATTCCTCCTCCTTCCCCTCCTCCTGCTGCTCCACCTCGCCATCGCCGCTCACGGCATCGGCATCAACTACGGCACGCTCGGCGACAACCTTCCACCGCCCGCGGCGGTGGCGAACTTCCTGAAGACGAAGACGACCATCGACCGCGTGAAGATCTACGACGTGAACCCGGACATCCTGCGGGCCTTCGCCGGCAGCGGCATCTCCGTGACGGTGACCGCCCCCAACGGCGACATCGCCGCCTTAACCAAAATCGACTCGGCGAGGCAGTGGGTGGCGACGCACATCAAACCCTTTCACCCTCAGACCAAAATTAATTACATCCTCGTCGGCAGCGAGGTTCTCCACTGGGGCGACACCAACATGATCCGCGGCCTCGTCCCTGCCATGAGAACCCTTCACTCAGCCCTCCTAGCCGAGGGCATAACCGACATTAAGGTAACCACTGCTCACTCTCTGGCGATAATGCGGTCATCGATACCACCAAGTATGGGCAGGTTCAGGCCCGGGTACGCAAAGCACGTGTTGGGCCCAATGCTGAAGTTTCTGAGGGAGACGAGAACACCCTTGATGGTGAACCCGTACCCGTACTTCGGTTACAACGGGAAAAACGTGAACTTTCTTCTGTTCAGGCCCAACCGAGGCTTGTACGACAGGTACACGAAGAGGAGTTACACGAACCAGTTCGACGCTCTGATGGACGCGGTGCACTCGGCGATGAATGCTTTGGGGTACGGTGACGTGGACATCGCCGTCGGCGAAACGGGGTGGCCCTCCGTTTGCGACGGTTGGGACGCGTGCAGCGTGGCGAACGCGCAGTCCTTTAACAGGGAACTGGTGAAGCACCTGGCGACGGGGAAGGGAACGCCATTGATGCCAAACCGAAGCTTCGAGACTTACATCTTCGCGCTCTTCAATGAGAACCAAAAGCCCGGCCCAATAGCCGAACGCAACTGGGGCCTCTTCCAACCTGATTTCACTCCCGTCTACGACTCCGGAATCCTCCGCAACGGACAGGCAGTTACACCTGCAAGACCTACACCTACAAGACCTGCAGCTCCTACAAAACCTGCACCTGCAGTAGGAGGTCAAAAATGGTGTGTGCCAAAGGCAGATGCTAGCAACCAAGCTTTGCAAGCAAACATAAACTATGTGTGCAGCCAAGGAGTTGATTGTAGGCCAATTCAACCAGGAGGAGATTGCTTTGCAGCCAACAACGTTAAGGCTCTTGCCACTTATGCCATGAATGCCTACTACCAGGCCAATGGGCGCCATGATTTCAACTGTGACTTCTCTCAAACTGGTGTTATTACTACTACTAATCCAAGTGAGTCTCACCACCATAGCAAAACTTGA >Glyma18g52860.3 sequence type=CDS gene model=Glyma18g52860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCACCACCTCCGCATTCCTCCTCCTTCCCCTCCTCCTGCTGCTCCACCTCGCCATCGCCGCTCACGGCATCGGCATCAACTACGGCACGCTCGGCGACAACCTTCCACCGCCCGCGGCGGTGGCGAACTTCCTGAAGACGAAGACGACCATCGACCGCGTGAAGATCTACGACGTGAACCCGGACATCCTGCGGGCCTTCGCCGGCAGCGGCATCTCCGTGACGGTGACCGCCCCCAACGGCGACATCGCCGCCTTAACCAAAATCGACTCGGCGAGGCAGTGGGTGGCGACGCACATCAAACCCTTTCACCCTCAGACCAAAATTAATTACATCCTCGTCGGCAGCGAGGTTCTCCACTGGGGCGACACCAACATGATCCGCGGCCTCGTCCCTGCCATGAGAACCCTTCACTCAGCCCTCCTAGCCGAGGGCATAACCGACATTAAGGTAACCACTGCTCACTCTCTGGCGATAATGCGGTCATCGATACCACCAAGTATGGGCAGGTTCAGGCCCGGGTACGCAAAGCACGTGTTGGGCCCAATGCTGAAGTTTCTGAGGGAGACGAGAACACCCTTGATGGTGAACCCGTACCCGTACTTCGGTTACAACGGGAAAAACGTGAACTTTCTTCTGTTCAGGCCCAACCGAGGCTTGTACGACAGGTACACGAAGAGGAGTTACACGAACCAGTTCGACGCTCTGATGGACGCGGTGCACTCGGCGATGAATGCTTTGGGGTACGGTGACGTGGACATCGCCGTCGGCGAAACGGGGTGGCCCTCCGTTTGCGACGGTTGGGACGCGTGCAGCGTGGCGAACGCGCAGTCCTTTAACAGGGAACTGGTGAAGCACCTGGCGACGGGGAAGGGAACGCCATTGATGCCAAACCGAAGCTTCGAGACTTACATCTTCGCGCTCTTCAATGAGAACCAAAAGCCCGGCCCAATAGCCGAACGCAACTGGGGCCTCTTCCAACCTGATTTCACTCCCGTCTACGACTCCGGAATCCTCCGCAACGGACAGTTTTTCTCTCCAAGATGGAGTACAATACACAATTCGAGATGCACCGGCCTGTAA
>Glyma18g52860.1 sequence type=predicted peptide gene model=Glyma18g52860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATTSAFLLLPLLLLLHLAIAAHGIGINYGTLGDNLPPPAAVANFLKTKTTIDRVKIYDVNPDILRAFAGSGISVTVTAPNGDIAALTKIDSARQWVATHIKPFHPQTKINYILVGSEVLHWGDTNMIRGLVPAMRTLHSALLAEGITDIKVTTAHSLAIMRSSIPPSMGRFRPGYAKHVLGPMLKFLRETRTPLMVNPYPYFGYNGKNVNFLLFRPNRGLYDRYTKRSYTNQFDALMDAVHSAMNALGYGDVDIAVGETGWPSVCDGWDACSVANAQSFNRELVKHLATGKGTPLMPNRSFETYIFALFNENQKPGPIAERNWGLFQPDFTPVYDSGILRNGQAVTPARPTPTRPAAPTKPAPAVGGQKWCVPKADASNQALQANINYVCSQGVDCRPIQPGGDCFAANNVKALATYAMNAYYQANGRHDFNCDFSQTGVITTTNPSHDKCKI* >Glyma18g52860.2 sequence type=predicted peptide gene model=Glyma18g52860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATTSAFLLLPLLLLLHLAIAAHGIGINYGTLGDNLPPPAAVANFLKTKTTIDRVKIYDVNPDILRAFAGSGISVTVTAPNGDIAALTKIDSARQWVATHIKPFHPQTKINYILVGSEVLHWGDTNMIRGLVPAMRTLHSALLAEGITDIKVTTAHSLAIMRSSIPPSMGRFRPGYAKHVLGPMLKFLRETRTPLMVNPYPYFGYNGKNVNFLLFRPNRGLYDRYTKRSYTNQFDALMDAVHSAMNALGYGDVDIAVGETGWPSVCDGWDACSVANAQSFNRELVKHLATGKGTPLMPNRSFETYIFALFNENQKPGPIAERNWGLFQPDFTPVYDSGILRNGQAVTPARPTPTRPAAPTKPAPAVGGQKWCVPKADASNQALQANINYVCSQGVDCRPIQPGGDCFAANNVKALATYAMNAYYQANGRHDFNCDFSQTGVITTTNPSESHHHSKT* >Glyma18g52860.3 sequence type=predicted peptide gene model=Glyma18g52860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATTSAFLLLPLLLLLHLAIAAHGIGINYGTLGDNLPPPAAVANFLKTKTTIDRVKIYDVNPDILRAFAGSGISVTVTAPNGDIAALTKIDSARQWVATHIKPFHPQTKINYILVGSEVLHWGDTNMIRGLVPAMRTLHSALLAEGITDIKVTTAHSLAIMRSSIPPSMGRFRPGYAKHVLGPMLKFLRETRTPLMVNPYPYFGYNGKNVNFLLFRPNRGLYDRYTKRSYTNQFDALMDAVHSAMNALGYGDVDIAVGETGWPSVCDGWDACSVANAQSFNRELVKHLATGKGTPLMPNRSFETYIFALFNENQKPGPIAERNWGLFQPDFTPVYDSGILRNGQFFSPRWSTIHNSRCTGL*
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