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Report for Sequence Feature Glyma18g52840

Feature Type:gene_model
Chromosome:Gm18
Start:61296817
stop:61297506
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g52840
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G55420AT Annotation by Michelle Graham. TAIR10: unknown protein; Has 21 Blast hits to 21 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:20547920-20548570 FORWARD LENGTH=216 SoyBaseE_val: 1.00E-88ISS
GO:0006949GO-bp Annotation by Michelle Graham. GO Biological Process: syncytium formation SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_B7E7C1UniRef Annotation by Michelle Graham. Most informative UniRef hit: cDNA clone:001-101-B09, full insert sequence n=3 Tax=Oryza RepID=B7E7C1_ORYSJ SoyBaseE_val: 4.00E-98ISS
UniRef100_I1N574UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N574_SOYBN SoyBaseE_val: 1.00E-169ISS

Expression Patterns of Glyma18g52840
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g52840
ParalogEvidenceComments
Glyma02g10140 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g52840 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g291400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g52840
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g52840
>Glyma18g52840.1   sequence type=CDS   gene model=Glyma18g52840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGAGAAAGAGAAGAGAAACAAGAACAAGAAGCAAAAGCACCAACACCCCAATGACCAAAGCACAAAGCAGAACTCTGATTTCTCCTTCAAGCCAAGCTCAGAGGTAAAGGGTATCAAATTTGGAGGCCAGTTCATAGTGAAGTCCTTCACAATCAGAAGAGCAAGACCCTTGGAGCTTCTCAAGGTTCTTTCTTTCCCACCAACCAACAACACCAACAAACCAAAGGACAAGCTCCCTTTCCCTTCCACCACAGCATTCTTGCCCACAAACTTCACCATCTTGGCACACCATGCTTGGCACACCCTCACCCTTGGCCTTGGCACCAAGAAGTCCAAGGTGCTCCTCTTTGTGTTTGAAACTGAGGCCATGAAGGCCTCAGTGGACAGAATTTGGCCACCAGAGATAGCACTTGGTGATGTCAACAAGAGGCTCATAAGGGGCCTCAATGGATGTGAGATGGCAAGGTTCAAGTTCAGAAAAGGGTGCATAACTTTCTATGTCTATGCTGTTAGGCAAGTAGGAAGCTTTGGCTTTTCCTGTGCTGAGGATCTAAGAACCATTCTTCAGTCTGTTGTGGAGCTTAAGGATTTCTTGGATCACACTGTTATGCTTTCCATGCCAAACCAAAGAAGCATCAGTTACTCACAGTCACAGTCACAACCTCAGGTAGCCATGGCTCATTAG
Predicted protein sequences of Glyma18g52840
>Glyma18g52840.1   sequence type=predicted peptide   gene model=Glyma18g52840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEKEKRNKNKKQKHQHPNDQSTKQNSDFSFKPSSEVKGIKFGGQFIVKSFTIRRARPLELLKVLSFPPTNNTNKPKDKLPFPSTTAFLPTNFTILAHHAWHTLTLGLGTKKSKVLLFVFETEAMKASVDRIWPPEIALGDVNKRLIRGLNGCEMARFKFRKGCITFYVYAVRQVGSFGFSCAEDLRTILQSVVELKDFLDHTVMLSMPNQRSISYSQSQSQPQVAMAH*






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