Glyma18g52810 - SoyBase

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Report for Sequence Feature Glyma18g52810

Feature Type:	gene_model
Chromosome:	Gm18
Start:	61285280
stop:	61289733
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g52810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G39630	AT	Annotation by Michelle Graham. TAIR10: Nucleotide-diphospho-sugar transferases superfamily protein \| chr2:16522008-16524561 REVERSE LENGTH=336	SoyBase	E_val: 2.00E-178	ISS
GO:0006486	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein glycosylation	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0046520	GO-bp	Annotation by Michelle Graham. GO Biological Process: sphingoid biosynthetic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
KOG2977	KOG	Glycosyltransferase	JGI		ISS
PTHR10859	Panther	GLYCOSYLTRANSFERASE RELATED	JGI		ISS
PTHR10859:SF42	Panther	DOLICHYL-PHOSPHATE BETA-GLUCOSYLTRANSFERASE	JGI		ISS
PF00535	PFAM	Glycosyl transferase family 2	JGI		ISS
UniRef100_G7L022	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dolichyl-phosphate beta-glucosyltransferase n=1 Tax=Medicago truncatula RepID=G7L022_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0001BA85E2	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001BA85E2 related cluster n=1 Tax=unknown RepID=UPI0001BA85E2	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g52810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g52810

Paralog	Evidence	Comments
Glyma02g10150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g52810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g291100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g52810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g52810

Limit To All Plant Sequences

>Glyma18g52810.2   sequence type=transcript   gene model=Glyma18g52810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGTCCGGGAAAGAGAACCGAGCGACTAAAACGGTGCGTTTGGGTCGGGTTGAACTTCGAAGTCTTGATCGACGACGTTGAGCGTTCTCTCTCTTCGTTCAGCTCAATCTGGGATACGAAGCTTGCAATAGCTGCAGCATCTGAATAGGAATGGATTATATCTGTCTTTTTGTCACCTTCACTGCGATTGCGCTCTTAGGGTTTGTCTTTGTAGTGTTTTTTGAAGCATATAAAAGAAGAAACAACCATCAGCATATCGAAGTTCCGGCTATTTTTGAAGATCCTAGCTCATTGAAACAGGTTCCTTGCCCACATATTGTTGATCCAGCCACAAAGTATATTTCTTTGATTATCCCTGCATTCAATGAGGAGCATAGGCTTCCAGGAGCTCTTGAGGAAACTATGAATTATCTTCATCAACGTACTTTAAAGGATTCTTCATTTACATATGAGGTTGTAATTATTGATGATGGAAGTGCTGATGAGACAAAAAGAGTAGCTTTTGAATTTGTGAGGAAATACACAGTAGACAAGGTAAGGGTCATCCTTCTAGGAAGAAATCATGGCAAAGGAGAAGCAATCAGAAAAGGAATGATGCATTCACGTGGTGAACTACTTCTTATGCTTGATGCTGATGGAGCAACTAAAGTCACTGACCTAGAAAAGCTTGAAAATCAGATTCAAGCTGTTGCCAAAAGGGAATATCACCATGGAGATTCAAGTGATAGTGATCCTAGATTTAGAATATCTGATGTCCCAGCTGCTGTGTTTGGCTCAAGAGCTCATCTAGAGGAGAAAGCTTTAGCTACAAGGAAGTGGTACCGCAATTTTTTGATGAAGGGCTTCCATCTTGTGGTTCTCTTGGCTGCTGGTCCTGGAATTCGTGATACACAGTGTGGTTTCAAGATGTTTACTAGGGCAGCAGCCAGGAAGCTTTTTTCAAATGTACGCTTAAAAAGGTGGTGCTTTGATGTTGAGTTAGTCTTTCTATGCAAGTGGTTTAGAATCCCAGTTTCAGAAATTTCTGTGAATTGGTCTGAAATTCCAGGATCCAAGGTGAATCTTCTGAGTATACCTAACATGCTTTGGGAGCTTGTGCTCATGTCTGTGGGGTACAGGACTGGTATGTGGAGAATTTCTAATTCTACCTGAGCGAGCGTGGATGATCAACTTAACTGGGAAGAGAAGTGGCATTTTCCTATCTAAACAAGAGTCACCTCTTACAAGAGAACATATACTCTCATGCCGGGCTTAAGGGACAATCATGCAATATTTAAAGTTTGTAGGACTAACCATAACTTTCCGGGTTATTCCCTTCAGTTTGGGATCATAGAGGCTTTTATCCTTTTTACTTTTAGTATTGCTATTTCTACCAGGTAAAAATATATTCAACATTATGTTGTTACTGTTGGCTGGGAATAGTTTTCAATCACATTGGTTTGTATTTTTCTTAATCAAAATATTATATAGATAACTTTGTATTCCTTTCATTCCATTTGAAAGACGTTATCTAATATTGGTGAGTTGTTGATGCTTTTTGTTCATCTCTCCTGGAAGTAAATGTTATGGCTGC

Coding sequences of Glyma18g52810

Limit To All Plant Sequences

>Glyma18g52810.1   sequence type=CDS   gene model=Glyma18g52810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTATATCTGTCTTTTTGTCACCTTCACTGCGATTGCGCTCTTAGGGTTTGTCTTTGTAGTGTTTTTTGAAGCATATAAAAGAAGAAACAACCATCAGCATATCGAAGTTCCGGCTATTTTTGAAGATCCTAGCTCATTGAAACAGGTTCCTTGCCCACATATTGTTGATCCAGCCACAAAGTATATTTCTTTGATTATCCCTGCATTCAATGAGGAGCATAGGCTTCCAGGAGCTCTTGAGGAAACTATGAATTATCTTCATCAACGTACTTTAAAGGATTCTTCATTTACATATGAGGTTGTAATTATTGATGATGGAAGTGCTGATGAGACAAAAAGAGTAGCTTTTGAATTTGTGAGGAAATACACAGTAGACAAGGTAAGGGTCATCCTTCTAGGAAGAAATCATGGCAAAGGAGAAGCAATCAGAAAAGGAATGATGCATTCACGTGGTGAACTACTTCTTATGCTTGATGCTGATGGAGCAACTAAAGTCACTGACCTAGAAAAGCTTGAAAATCAGATTCAAGCTGTTGCCAAAAGGGAATATCACCATGGAGATTCAAGTGATAGTGATCCTAGATTTAGAATATCTGATGTCCCAGCTGCTGTGTTTGGCTCAAGAGCTCATCTAGAGGAGAAAGCTTTAGCTACAAGGAAGTGGTACCGCAATTTTTTGATGAAGGGCTTCCATCTTGTGGTTCTCTTGGCTGCTGGTCCTGGAATTCGTGATACACAGTGTGGTTTCAAGATGTTTACTAGGGCAGCAGCCAGGAAGCTTTTTTCAAATGTACGCTTAAAAAGGATCCAAGGTGAATCTTCTGAGTATACCTAA

>Glyma18g52810.2   sequence type=CDS   gene model=Glyma18g52810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTATATCTGTCTTTTTGTCACCTTCACTGCGATTGCGCTCTTAGGGTTTGTCTTTGTAGTGTTTTTTGAAGCATATAAAAGAAGAAACAACCATCAGCATATCGAAGTTCCGGCTATTTTTGAAGATCCTAGCTCATTGAAACAGGTTCCTTGCCCACATATTGTTGATCCAGCCACAAAGTATATTTCTTTGATTATCCCTGCATTCAATGAGGAGCATAGGCTTCCAGGAGCTCTTGAGGAAACTATGAATTATCTTCATCAACGTACTTTAAAGGATTCTTCATTTACATATGAGGTTGTAATTATTGATGATGGAAGTGCTGATGAGACAAAAAGAGTAGCTTTTGAATTTGTGAGGAAATACACAGTAGACAAGGTAAGGGTCATCCTTCTAGGAAGAAATCATGGCAAAGGAGAAGCAATCAGAAAAGGAATGATGCATTCACGTGGTGAACTACTTCTTATGCTTGATGCTGATGGAGCAACTAAAGTCACTGACCTAGAAAAGCTTGAAAATCAGATTCAAGCTGTTGCCAAAAGGGAATATCACCATGGAGATTCAAGTGATAGTGATCCTAGATTTAGAATATCTGATGTCCCAGCTGCTGTGTTTGGCTCAAGAGCTCATCTAGAGGAGAAAGCTTTAGCTACAAGGAAGTGGTACCGCAATTTTTTGATGAAGGGCTTCCATCTTGTGGTTCTCTTGGCTGCTGGTCCTGGAATTCGTGATACACAGTGTGGTTTCAAGATGTTTACTAGGGCAGCAGCCAGGAAGCTTTTTTCAAATGTACGCTTAAAAAGGTGGTGCTTTGATGTTGAGTTAGTCTTTCTATGCAAGTGGTTTAGAATCCCAGTTTCAGAAATTTCTGTGAATTGGTCTGAAATTCCAGGATCCAAGGTGAATCTTCTGAGTATACCTAACATGCTTTGGGAGCTTGTGCTCATGTCTGTGGGGTACAGGACTGGTATGTGGAGAATTTCTAATTCTACCTGA

Predicted protein sequences of Glyma18g52810

Limit To All Plant Sequences

>Glyma18g52810.1   sequence type=predicted peptide   gene model=Glyma18g52810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDYICLFVTFTAIALLGFVFVVFFEAYKRRNNHQHIEVPAIFEDPSSLKQVPCPHIVDPATKYISLIIPAFNEEHRLPGALEETMNYLHQRTLKDSSFTYEVVIIDDGSADETKRVAFEFVRKYTVDKVRVILLGRNHGKGEAIRKGMMHSRGELLLMLDADGATKVTDLEKLENQIQAVAKREYHHGDSSDSDPRFRISDVPAAVFGSRAHLEEKALATRKWYRNFLMKGFHLVVLLAAGPGIRDTQCGFKMFTRAAARKLFSNVRLKRIQGESSEYT*

>Glyma18g52810.2   sequence type=predicted peptide   gene model=Glyma18g52810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDYICLFVTFTAIALLGFVFVVFFEAYKRRNNHQHIEVPAIFEDPSSLKQVPCPHIVDPATKYISLIIPAFNEEHRLPGALEETMNYLHQRTLKDSSFTYEVVIIDDGSADETKRVAFEFVRKYTVDKVRVILLGRNHGKGEAIRKGMMHSRGELLLMLDADGATKVTDLEKLENQIQAVAKREYHHGDSSDSDPRFRISDVPAAVFGSRAHLEEKALATRKWYRNFLMKGFHLVVLLAAGPGIRDTQCGFKMFTRAAARKLFSNVRLKRWCFDVELVFLCKWFRIPVSEISVNWSEIPGSKVNLLSIPNMLWELVLMSVGYRTGMWRISNST*

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