Report for Sequence Feature Glyma18g52800
Feature Type: gene_model
Chromosome: Gm18
Start: 61281619
stop: 61283613
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g52800
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G46540 AT
Annotation by Michelle Graham. TAIR10: ENTH/VHS family protein | chr3:17134204-17135411 REVERSE LENGTH=307
SoyBase E_val: 4.00E-67 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
PTHR12276 Panther
EPSIN/ENT-RELATED
JGI ISS
PTHR12276:SF10 Panther
ENT1-RELATED
JGI ISS
PF01417 PFAM
ENTH domain
JGI ISS
UniRef100_I1N571 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N571_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q9SNC4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: ENTH/VHS family protein n=1 Tax=Arabidopsis thaliana RepID=Q9SNC4_ARATH
SoyBase E_val: 2.00E-64 ISS
Expression Patterns of Glyma18g52800
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g52800
Paralog Evidence Comments
Glyma02g10161 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g52800 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g291000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g52800
Coding sequences of Glyma18g52800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g52800.2 sequence type=CDS gene model=Glyma18g52800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCAACTCCACTTTATGAAAAGTATTAGTGCTTTTGGTAATGGAGCAGTTGCACATGTTACGTACATAGATTCGCAAACTATAGATTATATAATAAAACTAGTCTTCAAAATCTTCGTCACCATTATCCTCAAAATTCTTCCAAAGAAGATTGTAAATATGAGTTCTCCTCTCATCCATGAAATCAAAGGGCAAGCATTTCGGTTCTTGAAGGAGAAGATTAAAACTGCAAGGCTAGCGCTCACAGATGTTACACCAGTACAGTTAATGACAGAAGAAGCCACAAATGAGAATCCATGGCCACCAGACACGCGTTCCACAAGTATAATAGCACGAGCTGCCTTCGAAGTGGATGAATATGAGAGAATCATAGAGATTTTGCATCACAGGTTGTTGAAATTCGATAAAGGGTATTGGAGAGCCTCATACAAGGCTCTTATTTTACTGGAACATCTACTAACTCATGGACCTAAAAGAGTATCCGAGGAGTTTCAATGTGATATAGATGTTATTGAAGAGATTGGACAATTTCAGTTCATTGATGAAAAAGGGTTCAACTGGGGTTTGAGAGTTAGAAAATTATCAGAAAGAATATTAAAGCTCTTAAGAAACAAGGATTTTTTCACAGAAGAAAGAGCAAGAGCACGTAATCTTTCTCATGCAATCAAAGGTTTTGGAAGTTTTAACCAACGAAGCTCAGCAATAGATGAAAGGTTAAGTGACTTACCTTCTAAGATTTACGGGAGATGTAATTCTTACTATGATAATCGTCAATATGAAAAATATGATTTCACAAGCTTAGGAAAGAAACTCAGTACTGCAAATGGAAATGAAAGAGAGCAACAAATACATGAAGACAATGACAATTCAAAGCTCCTAAAGCAAGAAAATGATCCAAATTCGGGAGAAGTCACAGAAGAATATCACCCCTTTATTGATGATCGAGAGAAACGGACTACAGCATCCCTGCTTTCTGTGTAA
Predicted protein sequences of Glyma18g52800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g52800.2 sequence type=predicted peptide gene model=Glyma18g52800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MQLHFMKSISAFGNGAVAHVTYIDSQTIDYIIKLVFKIFVTIILKILPKKIVNMSSPLIHEIKGQAFRFLKEKIKTARLALTDVTPVQLMTEEATNENPWPPDTRSTSIIARAAFEVDEYERIIEILHHRLLKFDKGYWRASYKALILLEHLLTHGPKRVSEEFQCDIDVIEEIGQFQFIDEKGFNWGLRVRKLSERILKLLRNKDFFTEERARARNLSHAIKGFGSFNQRSSAIDERLSDLPSKIYGRCNSYYDNRQYEKYDFTSLGKKLSTANGNEREQQIHEDNDNSKLLKQENDPNSGEVTEEYHPFIDDREKRTTASLLSV*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
