Glyma18g52770 - SoyBase

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Report for Sequence Feature Glyma18g52770

Feature Type:	gene_model
Chromosome:	Gm18
Start:	61265548
stop:	61269583
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g52770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G26055	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr4:13214098-13214429 REVERSE LENGTH=62	SoyBase	E_val: 2.00E-22	ISS
UniRef100_I1N569	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N569_SOYBN	SoyBase	E_val: 4.00E-38	ISS

Expression Patterns of Glyma18g52770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g52770 not represented in the dataset	Glyma18g52770 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g52770

Paralog	Evidence	Comments
Glyma02g10180	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g52770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g290700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g52770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g52770

Limit To All Plant Sequences

>Glyma18g52770.3   sequence type=transcript   gene model=Glyma18g52770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTCTACCATTAAAAATATCCCTTAGATTAATCAATAGTCTATTTTCTTATCATGGACTTTAAACACCAAATCCTTTCTCCTTTCTTGCCGGCGATGCTTGTCCACCGTGCGCCTCCGCCGGAGATATATTCGGCAGCGGACCCGCAACCGGAGACGATTTTCGATGGCGGCACCGCCACTTAAATTTTTCTCTCCGTTTTTTTTTTTCCATTCCCTTCCTCTTCTCTGCTCCTCCCTCAAGCCTTTGTTCTGCAACATTTTATTTCTCCTCCTTCGTTGACAACGGCTAGTTCTACGCTACCAGCGTCCCTCACCGTCAGTCTAGATCGAAATCAAGTTCAAGGACGAACGTGTCGACACACCGCTTGCTCCTCCCTCAACACTTCCGCACATTGTCAGCAAAGGCACCGCAGATTTGATCGTCGGCGGCGTGATTAGCAGATCTGGATAGCCATGTAACGCGACGTTGTTCGCAGTTTTTGGTGTTTTTTTTTTTTGTTTAACTGATTCTTAAGCTTTTAGTCCCCGAGACTCACTCTGTTTCACTATTTCCGGACTTTTTGGATTGTTTGTTTTTTCGTTACTTTGTCAATTTTTGCTTTGCTTGTCTCTGATTTTTATCGTAGATCGCCATCCATTTTTTCTTCTTTATTTTTTGGCACGGAGATTGTTGGTTTGGGTGGAGATAGTCAAAGAAAGAGAAGAAGGAAGAGGATAGGAGAAGAAAGGGTGGAGGGGGGGGGGGGATACAACAAGAGAGTCACCGTCGTCGGAAGTCATGGTGGTTACCAGTCGAAATTTGAGGAGCCGAGGAGCGAGAGAGAAAGAAGAAAAACATTTGGTACAACATGCCTACCAAATTACTGTGTACCTGAGATAAATCTAACCGTATAAAAAAGTGTGGTGAAATGGTGATAAGATAGAACATAGAGGAGACGTGGGACATGAATTGCATTGAAATATCTTGCATTTGCAGGAAACGTCAGAAATATTTTGTGAGGATGAATAGAAAATTTGGAGGTGGAAAGCAGCCAACAGGGACTCCTTCACTGGCTTGGTCCTGCGTGGTTGTTGTCTTCTCTCTTCTTGCTGGTGCCTCTGTTGTTCACAATATCTATAAGCCTAATCTTACATTGCCTCCTGTTGATGGAGTTGATAGCACCAAGCAGAAACATGATGAAAAAGAATGATCATTTCCCCTGCTGAATTCCTTTTCATTATCGTGAAGCCTTGCATTACAAGGACTTGACAGAGCATATTCAGTTAGGATCGAAGATGTTCTTAGTGCTGGACAACTATTTGTGGTTGGCTAGTTGTATAATCGGGCCCCAAGTAGCATTAGGGCTTATTTTATTGTAAAGTGGATACTGAATTGAAAGTTAATCTTAGAAAAGGTTGCATATCCTAATGAGATGGTATCCATAGATGTTTTCATTGTTGCCACTCCATAATTAGAGGAAAGAGGTGTTTTATCTTTTTGTTGTCCAATACTTTTTACACGTTGGAGAGAAAGAATAGGCTGTTACTCACCTATTGACTCGAGCAAATTCCACTCCTTTTCAGAGTAACACAATTGGTTAAATATGTATAAATTCTGTTTTACCTGCGC

>Glyma18g52770.4   sequence type=transcript   gene model=Glyma18g52770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTCTACCATTAAAAATATCCCTTAGATTAATCAATAGTCTATTTTCTTATCATGGACTTTAAACACCAAATCCTTTCTCCTTTCTTGCCGGCGATGCTTGTCCACCGTGCGCCTCCGCCGGAGATATATTCGGCAGCGGACCCGCAACCGGAGACGATTTTCGATGGCGGCACCGCCACTTAAATTTTTCTCTCCGTTTTTTTTTTTCCATTCCCTTCCTCTTCTCTGCTCCTCCCTCAAGCCTTTGTTCTGCAACATTTTATTTCTCCTCCTTCGTTGACAACGGCTAGTTCTACGCTACCAGCGTCCCTCACCGTCAGTCTAGATCGAAATCAAGTTCAAGGACGAACGTGTCGACACACCGCTTGCTCCTCCCTCAACACTTCCGCACATTGTCAGCAAAGGCACCGCAGATTTGATCGTCGGCGGCGTGATTAGCAGATCTGGATAGCCATGTAACGCGACGTTGTTCGCAGTTTTTGGTGTTTTTTTTTTTTGTTTAACTGATTCTTAAGCTTTTAGTCCCCGAGACTCACTCTGTTTCACTATTTCCGGACTTTTTGGATTGTTTGTTTTTTCGTTACTTTGTCAATTTTTGCTTTGCTTGTCTCTGATTTTTATCGTAGATCGCCATCCATTTTTTCTTCTTTATTTTTTGGCACGGAGATTGTTGGTTTGGGTGGAGATAGTCAAAGAAAGAGAAGAAGGAAGAGGATAGGAGAAGAAAGGGTGGAGGGGGGGGGGGGATACAACAAGAGAGTCACCGTCGTCGGAAGTCATGGTGGTTACCAGTCGAAATTTGAGGAGCCGAGGAGCGAGAGAGAAAGAAGAAAAACATTTGGTACAACATGCCTACCAAATTACTGTGTACCTGAGATAAATCTAACCGTATAAAAAAGTGTGGTGAAATGGTGATAAGATAGAACATAGAGGAGACGTGGGACATGAATTGCATTGAAATATCTTGCATTTGCAGGAAACGGTAAGTACAGTTCCCTCTTGTTCTTACCTTGCGAAATTCGGTATTAATTTCCTTATCAAATTTATTTAGAATGCAGTGACACAGTCTAAATTATCATCTATTCACAAATTTTCATATATGATAGGTTTCTTCTCGTATCATAACTACTTTAGAAATGATAACTGTAACAATTTGTTATTGGTTACCGGGTGTAAAACTCTTTCTCATTGTCATGGGAAATATAATTGACAGCCACCTAAACATATACTACTTCCTAACTGACATATTTAGATTATTGTGTTGTGCACCATCTGTTTGATGAAATTTCCAAGTTGGTTTCTAGAATTCTACAATTCTACCTTCAAAACCGTGTGTACAACTTGTTTGTTATAATGTCTGAACCACAACAAACATGCTTCTGTTGTGCTAATTCCTAGCCCACTTGTTCTTGGCCATCTTGCTCTCTTCTACCTGTTGTTATCCTCTACTTGCTTTTTTGGGGTTTATTCAGTAAGCTTGGAATAGTGTGGAATTAATTGGTTATTTTGTATCTTGAGGGCTTAGGCAACTTTCTGACTGTTTGGTTTTGTGCGGATATTTTTAAAATTGCCTGAAGTCAGAAATATTTTGTGAGGATGAATAGAAAATTTGGAGGTGGAAAGCAGCCAACAGGGACTCCTTCACTGGCTTGGTCCTGCGTGGTTGTTGTCTTCTCTCTTCTTGCTGGTGCCTCTGTTGTTCACAATATCTATAAGCCTAATCTTACATTGCCTCCTGTTGATGGAGTTGATAGCACCAAGCAGAAACATGATGAAAAAGAATGATCATTTCCCCTGCTGAATTCCTTTTCATTATCGTGAAGCCTTGCATTACAAGGACTTGACAGAGCATATTCAGTTAGGATCGAAGATGTTCTTAGTGCTGGACAACTATTTGTGGTTGGCTAGTTGTATAATCGGGCCCCAAGTAGCATTAGGGCTTATTTTATTGTAAAGTGGATACTGAATTGAAAGTTAATCTTAGAAAAGGTTGCATATCCTAATGAGATGGTATCCATAGATGTTTTCATTGTTGCCACTCCATAATTAGAGGAAAGAGGTGTTTTATCTTTTTGTTGTCCAATACTTTTTACACGTTGGAGAGAAAGAATAGGCTGTTACTCACCTATTGACTCGAGCAAATTCCACTCCTTTTCAGAGTAACACAATTGGTTAAATATGTATAAATTCTGTTTTACCTGCGC

>Glyma18g52770.5   sequence type=transcript   gene model=Glyma18g52770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTATTTTCTTATCATGGACTTTAAACACCAAATCCTTTCTCCTTTCTTGCCGGCGATGCTTGTCCACCGTGCGCCTCCGCCGGAGATATATTCGGCAGCGGACCCGCAACCGGAGACGATTTTCGATGGCGGCACCGCCACTTAAATTTTTCTCTCCGTTTTTTTTTTTCCATTCCCTTCCTCTTCTCTGCTCCTCCCTCAAGCCTTTGTTCTGCAACATTTTATTTCTCCTCCTTCGTTGACAACGGCTAGTTCTACGCTACCAGCGTCCCTCACCGTCAGTCTAGATCGAAATCAAGTTCAAGGACGAACGTGTCGACACACCGCTTGCTCCTCCCTCAACACTTCCGCACATTGTCAGCAAAGGCACCGCAGATTTGATCGTCGGCGGCGTGATTAGCAGATCTGGATAGCCATGTAACGCGACGTTGTTCGCAGTTTTTGGTGTTTTTTTTTTTTGTTTAACTGATTCTTAAGCTTTTAGTCCCCGAGACTCACTCTGTTTCACTATTTCCGGACTTTTTGGATTGTTTGTTTTTTCGTTACTTTGTCAATTTTTGCTTTGCTTGTCTCTGATTTTTATCGTAGATCGCCATCCATTTTTTCTTCTTTATTTTTTGGCACGGAGATTGTTGGTTTGGGTGGAGATAGTCAAAGAAAGAGAAGAAGGAAGAGGATAGGAGAAGAAAGGGTGGAGGGGGGGGGGGGATACAACAAGAGAGTCACCGTCGTCGGAAGTCATGGTGGTTACCAGTCGAAATTTGAGGAGCCGAGGAGCGAGAGAGAAAGAAGAAAAACATTTGGTACAACATGCCTACCAAATTACTGTGTACCTGAGATAAATCTAACCGTATAAAAAAGTGTGGTGAAATGGTGATAAGATAGAACATAGAGGAGACGTGGGACATGAATTGCATTGAAATATCTTGCATTTGCAGGAAACGGCAACTTTCTGACTGTTTGGTTTTGTGCGGATATTTTTAAAATTGCCTGAAGTCAGAAATATTTTGTGAGGATGAATAGAAAATTTGGAGGTGGAAAGCAGCCAACAGGGACTCCTTCACTGGCTTGGTCCTGCGTGGTTGTTGTCTTCTCTCTTCTTGCTGGTGCCTCTGTTGTTCACAATATCTATAAGCCTAATCTTACATTGCCTCCTGTTGATGGAGTTGATAGCACCAAGCAGAAACATGATGAAAAAGAATGATCATTTCCCCTGCTGAATTCCTTTTCATTATCGTGAAGCCTTGCATTACAAGGACTTGACAGAGCATATTCAGTTAGGATCGAAGATGTTCTTAGTGCTGGACAACTATTTGTGGTTGGCTAGTTGTATAATCGGGCCCCAAGTAGCATTAGGGCTTATTTTATTGTAAAGTGGATACTGAATTGAAAGTTAATCTTAGAAAAGGTTGCATATCCTAATGAGATGGTATCCATAGATGTTTTCATTGTTGCCACTCCATAATTAGAGGAAAGAGGTGTTTTATCTTTTTGTTGTCCAATACTTTTTACACGTTGGAGAGAAAGAATAGGCTGTTACTCACCTATTGACTCGAGCAAATTCCACTCCTTTTCAGA

Coding sequences of Glyma18g52770

Limit To All Plant Sequences

>Glyma18g52770.2   sequence type=CDS   gene model=Glyma18g52770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATAGAAAATTTGGAGGTGGAAAGCAGCCAACAGGGACTCCTTCACTGGCTTGGTCCTGCGTGGTTGTTGTCTTCTCTCTTCTTGCTGGTGCCTCTGTTGTTCACAATATCTATAAGCCTAATCTTACATTGCCTCCTGTTGATGGAGTTGATAGCACCAAGCAGAAACATGATGAAAAAGAATGA

>Glyma18g52770.3   sequence type=CDS   gene model=Glyma18g52770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTGCATTGAAATATCTTGCATTTGCAGGAAACGTCAGAAATATTTTGTGAGGATGAATAGAAAATTTGGAGGTGGAAAGCAGCCAACAGGGACTCCTTCACTGGCTTGGTCCTGCGTGGTTGTTGTCTTCTCTCTTCTTGCTGGTGCCTCTGTTGTTCACAATATCTATAAGCCTAATCTTACATTGCCTCCTGTTGATGGAGTTGATAGCACCAAGCAGAAACATGATGAAAAAGAATGA

>Glyma18g52770.4   sequence type=CDS   gene model=Glyma18g52770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATAGAAAATTTGGAGGTGGAAAGCAGCCAACAGGGACTCCTTCACTGGCTTGGTCCTGCGTGGTTGTTGTCTTCTCTCTTCTTGCTGGTGCCTCTGTTGTTCACAATATCTATAAGCCTAATCTTACATTGCCTCCTGTTGATGGAGTTGATAGCACCAAGCAGAAACATGATGAAAAAGAATGA

>Glyma18g52770.5   sequence type=CDS   gene model=Glyma18g52770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATAGAAAATTTGGAGGTGGAAAGCAGCCAACAGGGACTCCTTCACTGGCTTGGTCCTGCGTGGTTGTTGTCTTCTCTCTTCTTGCTGGTGCCTCTGTTGTTCACAATATCTATAAGCCTAATCTTACATTGCCTCCTGTTGATGGAGTTGATAGCACCAAGCAGAAACATGATGAAAAAGAATGA

Predicted protein sequences of Glyma18g52770

Limit To All Plant Sequences

>Glyma18g52770.2   sequence type=predicted peptide   gene model=Glyma18g52770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNRKFGGGKQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNLTLPPVDGVDSTKQKHDEKE*

>Glyma18g52770.3   sequence type=predicted peptide   gene model=Glyma18g52770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNCIEISCICRKRQKYFVRMNRKFGGGKQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNLTLPPVDGVDSTKQKHDEKE*

>Glyma18g52770.4   sequence type=predicted peptide   gene model=Glyma18g52770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNRKFGGGKQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNLTLPPVDGVDSTKQKHDEKE*

>Glyma18g52770.5   sequence type=predicted peptide   gene model=Glyma18g52770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNRKFGGGKQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNLTLPPVDGVDSTKQKHDEKE*

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