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Report for Sequence Feature Glyma18g52710

Feature Type:gene_model
Chromosome:Gm18
Start:61235620
stop:61236150
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g52710
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G32020AT Annotation by Michelle Graham. TAIR10: Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr2:13631193-13631744 REVERSE LENGTH=183 SoyBaseE_val: 5.00E-40ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0008080GO-mf Annotation by Michelle Graham. GO Molecular Function: N-acetyltransferase activity SoyBaseN/AISS
PF00583PFAM Acetyltransferase (GNAT) family JGI ISS
UniRef100_G7KXV4UniRef Annotation by Michelle Graham. Most informative UniRef hit: N-acetyltransferase, putative n=1 Tax=Medicago truncatula RepID=G7KXV4_MEDTR SoyBaseE_val: 2.00E-83ISS
UniRef100_I1N563UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N563_SOYBN SoyBaseE_val: 3.00E-117ISS

Expression Patterns of Glyma18g52710
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g52710 not represented in the dataset
Glyma18g52710 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g52710 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma18g52710
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g52710
>Glyma18g52710.1   sequence type=CDS   gene model=Glyma18g52710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATTGATCTATCAAGGATCTCTGTCCGGCCATTCAAAGCAAGTGAAGAAGCTGACGATGTATTGTTATGGTTGGGAGATGCAAGGGTGACTCAGTACACACGATTAGAGACATGTGGGTCCAGGTCAGAAGCTTTGACATTCCTGAAAGATGAGTGTGTTTACCCCTTACGCCGGTCAATATGCCTTGATGATCGTTCCATAGGGATTGTTTGGGTGCTTCCTTATTCGGGTGATGAAAGGTACAAAGCTGACTTGGGATATGCCTTAGGGGTCAACTATTGGGGCAATGGGATAGCCACTAAGGCACTGAAGATTGTTTTGTCCCAAGTCTTCCACGATTTCCCTCACTTGAGAAGGTTGCAAGCTTATACTTATTTGGACAACAAGGCTTCCCAGAGGGTGTTGGAGAAGGTTGGGTTCCATAGGGAGGGGATAATCAGAGATTTGTACTTTAAGGGGAAGAGTGATGATTTCTATATTTTTAGATTTTTGTCAACAGATGAAATTCCTTCTTTGATTGCTTAA
Predicted protein sequences of Glyma18g52710
>Glyma18g52710.1   sequence type=predicted peptide   gene model=Glyma18g52710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAIDLSRISVRPFKASEEADDVLLWLGDARVTQYTRLETCGSRSEALTFLKDECVYPLRRSICLDDRSIGIVWVLPYSGDERYKADLGYALGVNYWGNGIATKALKIVLSQVFHDFPHLRRLQAYTYLDNKASQRVLEKVGFHREGIIRDLYFKGKSDDFYIFRFLSTDEIPSLIA*






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