Glyma18g52630 - SoyBase

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Report for Sequence Feature Glyma18g52630

Feature Type:	gene_model
Chromosome:	Gm18
Start:	61187672
stop:	61194596
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g52630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G39550	AT	Annotation by Michelle Graham. TAIR10: Prenyltransferase family protein \| chr2:16501666-16504144 FORWARD LENGTH=375	SoyBase	E_val: 3.00E-164	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009788	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0018344	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein geranylgeranylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005953	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CAAX-protein geranylgeranyltransferase complex	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: CAAX-protein geranylgeranyltransferase activity	SoyBase	N/A	ISS
GO:0046982	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity	SoyBase	N/A	ISS
KOG0367	KOG	Protein geranylgeranyltransferase Type I, beta subunit	JGI		ISS
PTHR11774	Panther	GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT	JGI		ISS
PTHR11774:SF4	Panther	GERANYLGERANYL TRANSFERASE TYPE I BETA SUBUNIT	JGI		ISS
PF00432	PFAM	Prenyltransferase and squalene oxidase repeat	JGI		ISS
UniRef100_G7KXT5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Geranylgeranyl transferase type-1 subunit beta n=1 Tax=Medicago truncatula RepID=G7KXT5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N554	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N554_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g52630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g52630

Paralog	Evidence	Comments
Glyma02g10280	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g52630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g289300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g52630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g52630

Limit To All Plant Sequences

>Glyma18g52630.2   sequence type=transcript   gene model=Glyma18g52630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATTTTTTTGCCATTCCTTGCTTAGAAGCTTCATGTTTATAGGATAAATTATTTTCTTTTGTTATTCACTGACCTAAAGCCATAATTTAAAAATGAATATTCACCAAACTGTTAACAAGCATTGCTCAAACTTAATGTTATATTTCTGATTCTGATTTCTCACTAGTGAATTTGAGGATCAGCAGTAGTGATGAATTCCACAGAAGAAGAGTGTCGTGGCTGCGAGATTATGGAGAAAGATGCTCATGTCAGGTTTCTCGAGTTAATGTACTATATGCTCCCATCTCCGTACGAGTCCCAAGAGATCAACCATCTCACCCTCGCTTACTTTGTCATCTCTGGACTTGACATTCTCAACTCACTCCACAAAGTCGCGAAGGATGCTGTTATCAGTTGGGTTTTGTCTTTCCAAGCTCACCCTGGTGCCAAGGCTGATCTCAATGATGGACAATTCTATGGCTTTCATGGGTCCAAAACTTCGCAGTTTCCTCCAGATGAGAATGGGGTTTTGATTCACAACAACAGTCACTTGGCAAGTACTTATTGCGCCATTTCCATATTGAAAATTGTTGGTTATGAATTGTCCAATCTTGATTCTGAAACAATTGTGACTTCTATGAGGAACCTTCAACAGCCTGATGGAAGTTTCATTTCTATTCATACTGGAGGCGAAACAGATCTTAGGTTTGTGTATTGTGCAGCTACCATCTGTTTCATGTTGGATAACTGGAGTGGCATGGACAAGGAGAAAACCAAGGATTACATATTACGTTGCCAGAGGCAGGGAACTGATGGGGGTTTTCAAGGTAGACCAAATAAATCCAGTGATACATGTTATGCATTTTGGATTGGAGCCGTTTTAAGGATTCTAGGGGGCTGCAAATTTGTTGACAGTAAGGCTCTACGTGGATTTTTGCTTTCTTGTCAATATAAGTATGGTGGTTTCGGAAAATTCCCTGGAGAGTATCCAGACCTGTACCACTCCTACTATGGAGTTACCGCTTTCAGCTTGTTGGAAGAATCTGCTTTGAAATCACTTTGTTCTGAACTGGGAATTCACTGAAAATGCTGCACTGGCACTCTAGCATAGATTCAGAAATGGATGCACCTTTATACCTGACATTTCTTGCATATTATATGAAGCTCTCAGCACTAATCCACTCTTAATGGACTTTTCTTTTTTATTCTTTCACAAATTTAGATGGATTGTAAATTTTCAATTTCATTTGATTGTATTTGTGATTTTGTGTGCATCAATTCAGGTTATCGGGCCTCTTCTGTTTAGATCAAGCTTTTTTTCATTGCTTTCTTTTTTGTTTTATTTACATTTCCATGAAGTTTATTAAATATGTTAATTTGAAGTTCAG

Coding sequences of Glyma18g52630

Limit To All Plant Sequences

>Glyma18g52630.1   sequence type=CDS   gene model=Glyma18g52630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTCCACAGAAGAAGAGTGTCGTGGCTGCGAGATTATGGAGAAAGATGCTCATGTCAGGTTTCTCGAGTTAATGTACTATATGCTCCCATCTCCGTACGAGTCCCAAGAGATCAACCATCTCACCCTCGCTTACTTTGTCATCTCTGGACTTGACATTCTCAACTCACTCCACAAAGTCGCGAAGGATGCTGTTATCAGTTGGGTTTTGTCTTTCCAAGCTCACCCTGGTGCCAAGGCTGATCTCAATGATGGACAATTCTATGGCTTTCATGGGTCCAAAACTTCGCAGTTTCCTCCAGATGAGAATGGGGTTTTGATTCACAACAACAGTCACTTGGCAAGTACTTATTGCGCCATTTCCATATTGAAAATTGTTGGTTATGAATTGTCCAATCTTGATTCTGAAACAATTGTGACTTCTATGAGGAACCTTCAACAGCCTGATGGAAGTTTCATTTCTATTCATACTGGAGGCGAAACAGATCTTAGGTTTGTGTATTGTGCAGCTACCATCTGTTTCATGTTGGATAACTGGAGTGGCATGGACAAGGAGAAAACCAAGGATTACATATTACGTTGCCAGTCTTACGATGGTGGCTTTGGATTAGTTCCTGGTGCAGAATCTCATGGAGGTGCAACTTATTGTGCTATTGCATCTCTCCGATTAATGGGATTCATTGGAGATAATATTCTCTCAAGTTGTGCTTCATCTTCTTTGATAGATGCACCATTGCTGCTGGACTGGATCTTGCAGAGGCAGGGAACTGATGGGGGTTTTCAAGGTAGACCAAATAAATCCAGTGATACATGTTATGCATTTTGGATTGGAGCCGTTTTAAGGATTCTAGGGGGCTGCAAATTTGTTGACAGTAAGGCTCTACGTGGATTTTTGCTTTCTTGTCAATATAAGTATGGTGGTTTCGGAAAATTCCCTGGAGAGTATCCAGACCTGTACCACTCCTACTATGGAGTTACCGCTTTCAGCTTGTTGGAAGAATCTGCTTTGAAATCACTTTGTTCTGAACTGGGAATTCACTGA

>Glyma18g52630.2   sequence type=CDS   gene model=Glyma18g52630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTCCACAGAAGAAGAGTGTCGTGGCTGCGAGATTATGGAGAAAGATGCTCATGTCAGGTTTCTCGAGTTAATGTACTATATGCTCCCATCTCCGTACGAGTCCCAAGAGATCAACCATCTCACCCTCGCTTACTTTGTCATCTCTGGACTTGACATTCTCAACTCACTCCACAAAGTCGCGAAGGATGCTGTTATCAGTTGGGTTTTGTCTTTCCAAGCTCACCCTGGTGCCAAGGCTGATCTCAATGATGGACAATTCTATGGCTTTCATGGGTCCAAAACTTCGCAGTTTCCTCCAGATGAGAATGGGGTTTTGATTCACAACAACAGTCACTTGGCAAGTACTTATTGCGCCATTTCCATATTGAAAATTGTTGGTTATGAATTGTCCAATCTTGATTCTGAAACAATTGTGACTTCTATGAGGAACCTTCAACAGCCTGATGGAAGTTTCATTTCTATTCATACTGGAGGCGAAACAGATCTTAGGTTTGTGTATTGTGCAGCTACCATCTGTTTCATGTTGGATAACTGGAGTGGCATGGACAAGGAGAAAACCAAGGATTACATATTACGTTGCCAGAGGCAGGGAACTGATGGGGGTTTTCAAGGTAGACCAAATAAATCCAGTGATACATGTTATGCATTTTGGATTGGAGCCGTTTTAAGGATTCTAGGGGGCTGCAAATTTGTTGACAGTAAGGCTCTACGTGGATTTTTGCTTTCTTGTCAATATAAGTATGGTGGTTTCGGAAAATTCCCTGGAGAGTATCCAGACCTGTACCACTCCTACTATGGAGTTACCGCTTTCAGCTTGTTGGAAGAATCTGCTTTGAAATCACTTTGTTCTGAACTGGGAATTCACTGA

Predicted protein sequences of Glyma18g52630

Limit To All Plant Sequences

>Glyma18g52630.1   sequence type=predicted peptide   gene model=Glyma18g52630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNSTEEECRGCEIMEKDAHVRFLELMYYMLPSPYESQEINHLTLAYFVISGLDILNSLHKVAKDAVISWVLSFQAHPGAKADLNDGQFYGFHGSKTSQFPPDENGVLIHNNSHLASTYCAISILKIVGYELSNLDSETIVTSMRNLQQPDGSFISIHTGGETDLRFVYCAATICFMLDNWSGMDKEKTKDYILRCQSYDGGFGLVPGAESHGGATYCAIASLRLMGFIGDNILSSCASSSLIDAPLLLDWILQRQGTDGGFQGRPNKSSDTCYAFWIGAVLRILGGCKFVDSKALRGFLLSCQYKYGGFGKFPGEYPDLYHSYYGVTAFSLLEESALKSLCSELGIH*

>Glyma18g52630.2   sequence type=predicted peptide   gene model=Glyma18g52630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNSTEEECRGCEIMEKDAHVRFLELMYYMLPSPYESQEINHLTLAYFVISGLDILNSLHKVAKDAVISWVLSFQAHPGAKADLNDGQFYGFHGSKTSQFPPDENGVLIHNNSHLASTYCAISILKIVGYELSNLDSETIVTSMRNLQQPDGSFISIHTGGETDLRFVYCAATICFMLDNWSGMDKEKTKDYILRCQRQGTDGGFQGRPNKSSDTCYAFWIGAVLRILGGCKFVDSKALRGFLLSCQYKYGGFGKFPGEYPDLYHSYYGVTAFSLLEESALKSLCSELGIH*

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