Glyma18g52600 - SoyBase

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Report for Sequence Feature Glyma18g52600

Feature Type:	gene_model
Chromosome:	Gm18
Start:	61161712
stop:	61165968
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g52600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G39570	AT	Annotation by Michelle Graham. TAIR10: ACT domain-containing protein \| chr2:16507963-16509741 FORWARD LENGTH=411	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016597	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amino acid binding	SoyBase	N/A	ISS
UniRef100_B9SR22	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Amino acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9SR22_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1N552	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1N552_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g52600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g52600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g289000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g52600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g52600

Limit To All Plant Sequences

>Glyma18g52600.1   sequence type=CDS   gene model=Glyma18g52600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTATTCCATGGGACGACGTCGTTGTGATCCAGCAAGGGAAGGATCACAATGAGCCCTGCATCGTCACCGTCAATTGCCCCGACAAGGCTGGTCTCGGCTGTGATCTTTGCAGAATCATCCTCGAGTTCGGTCTCCGCATTACCCGTGCTGATATTTCCACGGATGGAAGATGGTGCTACATCGTCTATTGGGTTCTTGCACATCCAGCATCGCTCAACGTTGATTGGGAGAGTTTGAAGACTCGGCTCCTTTCAGCTTGCCCTTCATGTTTGCTTTCCTATCACTTCAATCAGCACTCCACTAGTCCTTCACCGCCTCCGATTTACCTGTTGAAGGTTTGGTGTGTTGATCAAAAAGGATTGCTACATGATATTAATGAAATCCTGTGCAACCTTGAACTTATTATTCAGAGAGTCAAAGCGATGCCAACCCCAGATGGAAGGGTGTTAGACATGTTCTTTATCACTGATGGGATGGAATTGCTTCACACCAAAAAGAGGCAAGATTATGTATGTGAATATCTGATGGATGCTTTAGGAGAGAGGTGTATCTCCAGTGAACTTCAGTTGGCTGGGCCTGAATACGGACATTTGCAGGGGTTTTCTTCTCTTCCACCAGCTTTTGCTGAAGAGTTATTTAGTTCTGAGCTGTTAGACAAGTTGTCTTTGCATCCTCTCAGCCAAGATATGACAACACTGAAGACACCTACTGTTACTGTGGATAACTCACTGAGCCCAGTTCATACCCTGCTTCAGATACAATGCGTTGATCAGAAGGGCTTGTGTTATGACATTATGAGGATTTCTAAAGACTCTGATATTAAGGTTGCTTTTGGTCGATTTTCTTCAAGTGTGAAAGGCTTTCGGAATATAGACTTGTTTGTCCAGCACAACGATGGGAAAAAGATCATAGATCCTGAAAGCCAGAAAACCTTGTGTTCATGCTTAAAAGAAGAGATGCTTCATCCGTTGCGGGTGACGATAGTGAACCGGGGTCCAGACACAGAACTTCTGGTTGCTAATCCTGTGGAGCTGAGTGGAAAGGGGAGACCCCGTGTATTCTATGATGTTACGTTGACTTTAAAAGCGTTGGGAGTAGGCATTTTCTCGGCTGAAGTTGTTAGACATTCAACACAAGAACGTCAATGGGAAGTGTATAGATTTTTGTTGGAGGAAAGCCGTGACTTTCCATTGACCAGAAGCCAAGCAAGAACTCAGATTGTTGACAAAGTTAGAAGAACACTGATGGGCTGGTAA

Predicted protein sequences of Glyma18g52600

Limit To All Plant Sequences

>Glyma18g52600.1   sequence type=predicted peptide   gene model=Glyma18g52600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGIPWDDVVVIQQGKDHNEPCIVTVNCPDKAGLGCDLCRIILEFGLRITRADISTDGRWCYIVYWVLAHPASLNVDWESLKTRLLSACPSCLLSYHFNQHSTSPSPPPIYLLKVWCVDQKGLLHDINEILCNLELIIQRVKAMPTPDGRVLDMFFITDGMELLHTKKRQDYVCEYLMDALGERCISSELQLAGPEYGHLQGFSSLPPAFAEELFSSELLDKLSLHPLSQDMTTLKTPTVTVDNSLSPVHTLLQIQCVDQKGLCYDIMRISKDSDIKVAFGRFSSSVKGFRNIDLFVQHNDGKKIIDPESQKTLCSCLKEEMLHPLRVTIVNRGPDTELLVANPVELSGKGRPRVFYDVTLTLKALGVGIFSAEVVRHSTQERQWEVYRFLLEESRDFPLTRSQARTQIVDKVRRTLMGW*

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