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Report for Sequence Feature Glyma18g52575

Feature Type:gene_model
Chromosome:Gm18
Start:61147968
stop:61154414
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g52575
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G01900AT Annotation by Michelle Graham. TAIR10: subtilase family protein | chr1:310332-313011 FORWARD LENGTH=774 SoyBaseE_val: 0ISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0043086GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of catalytic activity SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0031012GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular matrix SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0004252GO-mf Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity SoyBaseN/AISS
GO:0042802GO-mf Annotation by Michelle Graham. GO Molecular Function: identical protein binding SoyBaseN/AISS
PTHR10795Panther SUBTILISIN/KEXIN-RELATED SERINE PROTEASE JGI ISS
PTHR10795:SF17Panther gb def: possible protease [sinorhizobium meliloti] JGI ISS
PF00082PFAM Subtilase family JGI ISS
PF02225PFAM PA domain JGI ISS
PF05922PFAM Peptidase inhibitor I9 JGI ISS
UniRef100_G7L1F9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Subtilisin-like protease n=1 Tax=Medicago truncatula RepID=G7L1F9_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1N549UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N549_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g52575
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g52575 not represented in the dataset
Glyma18g52575 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g52575
ParalogEvidenceComments
Glyma02g10340 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g52575 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma18g52575
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g52575
>Glyma18g52575.1   sequence type=CDS   gene model=Glyma18g52575   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCAGACGAAAATCAAAGCCTCAAATCAAGACAGCACAAAACCATGGTATGAATCAATCATTGATTTCATTTCTGAATCTTCAATGCAAGAAGATGATGAAGAAGACATTTTAGCTCCTCAACTCCTTTACACCTATGAAACCAGCATGTTTGGTTTTGCTGTCCATCTTTCCAAGAAACACCTCAAATACTTGAACCAAGTGGATGGTTTTCTCTCAGCCATACCTGATGAACTGTCAACCCTCCACACAACATACAGCCCTCACTTTCTTGGCCTAAGGAATGGAAGATCACTTTGGAGTGCTTCTAACTTGGCCACAGATGTGATCATAGGAGTTCTTGATTCGGGAATATGGCCCGAGCACATCAGCTTCCAAGACTCAGGCATGTCCCCAGTGCCTTCTCATTGGAAAGGTGTTTGTGAAAAGGGCACCAAGTTCTCTTCCTCAAATTGCAACAAGAAGCTTATTGGTGCAAGAACCTATTACAAGGGGTATGAAAAATTCTTTGGGAAAAAAATCAATGAAACAGTGGATTATCTTTCTCCAAGAGATTCCGAAGGGCATGGAACACACACTGCCTCAACTGCAGCTGGTAGAGTGGTGAAAAATGCCAACCTTTTTGGCCAGGCTAGAGGTACAGCAAGTGGAATGAGTGATAGCATTGCCATAGCTTCATTTGGGGCAACCAAGAAAGGGGTTTTTGTTGCTTGCTCCGCAGGCAATTCAGGCCCCTTTCCATCGACAGTTGGAAATGGTGCTCCATGGATCACGACAGTTGCTGCTAGCTCCACTGACCGAAGCTTTCCGACAAAAGTAAAACTTGGGAATGGAAAAACCTTCGAAGGGTCATCTTTATATCAAGGTAAGAAGACAAACCAATTGCCCCTTGTCTATGGCAAATCAGCAGGTGCAAAAAAGGAAGCACAGTATTGCATTGGAGGCTCCCTTGATCCAAAGCTTGTCCATGGGAAAATAGTTGCTTGTGAAAGAGGTATAAATGGTAGAACTGAGAAGGGAGAGGAAGTGAAAGTGGCAGGAGGGGCAGGAATGATACTACTCAACAATGAATATCAAGGAGAAGAGCTTTTCGCTGACCCTCATATTTTGCCAGCCACTTCCTTAGGGGCTTCAGCAAGTAAAACTATTAGAAGCTATAGTCAATCTGTTAAAAAACCAACAGCTTCAATTTCCTTTATGGGGACAAGGTTTGGTGACCCTGCACCTGTGATGGCAGCATTTTCTTCAAGAGGACCAAGCCTAGTGGGACCAGATGTAATTAAGCCTGATGTGACTGCACCTGGTGTGAACATCTTGGCTGCTTGGCCAAGCAAAATTAGCCCAAGCTTTCTCATGAGTGACAAAAGAAAAGTACTATTTAACATACTTTCTGGTACTTCAATGTCTTGTCCTCATGTTAGTGGCATAGCAGCACTGCTCAAGTCTTTCCACAAAGATTGGTCCCCTGCAGCCATTAAATCTGCTCTGATGACTACTGCTTACACATTGAACAACAAAGGAGCTCCAATTTCAGACATGGCCTCAGATAACTCACCATTTGCTACCCCCTTTGCATTTGGTTCAGGCCATGTTAACCCTGTAAATGCTTCTGATCCAGGATTAGTCTATGATATCAGCACCAAAGACTACTTAAATTATTTATGCAGCATAAACTATACCTCTTCTCAGATTGCTTTATTATCAAGAGGTAAATTTGTATGTTCTAAAAAAACACTTCTTCAAGCTGGTAACTTGAACTACCCTTCATTTTCTGTTCTATTTGGCAGAAGTGCCTCCAATGCTAGTGTGACATACAGGAGGGTTGTCACAAATGTTGGAAACCCCCAAAGTGCTTATGCAGTTAAATTGGAACAGCCAAATGGAGTTTCAGTTACTGTTGAACCAAGGAAATTGAAATTTGAAAAAGTGGGTCAGAAATTGAGCTACAAGGTGACATTTTTGTCAATTGGAGGAGCAAGAGTTGCAGGCATCATGATCTTTAGGATACTTTTCCTATTTCTGGCTTTTATGGCGACAAATTCAATAGCTGTTGCAGACCAACAGACATACATAGTACACATGGACAAGACCAAGCTCAAAGTCTCAATTCATTCTCATGACAGATCAAAACCATGGTCTGAATCAATCATTTATTTCATTTCTGAAGCTTCAATGCAAGAAGAAGAAGAAAAAGAAGAGATTTTAGCCCCTCAACTCCTTTACACCTATGAAACCACCATGTTTGGTTTTGCAGCCCAGCTTTCCAAGAAACACCTTAAATACTTGAACCAAGTGGATGGCTTCCTCTCGGCCATACCTGATGAACTATCGACCCTCCACACAACATACACCCCTCACTTTCTTGGCCTAGATAATGGAAGTGCACTTTGGAGTGCTTCTAACTTGGCCTCAGATATGATTATTGGTGTTATAGATTCAGGAATATGGCCTGAACATATCAGTTTCCAAGACTCAGGCTTGTCTCCAGTACCTTCTCATTGGAAAGGTGTCTGTGAACAAGGCACCAATTTCTCTGCCTCAGATTGTAACAAGAAGCTTATTGGTGCAAGAACCTATTTCAAGGGGTATGAAAAAGTTTTTGGAAAATTAAATGAAACAGTGAGTTATCTTTCCCCAAGAGATTCCGAAGGGCATGGAACACACACTGCCTCAACTGCAGCTGGTAATGTGGTGAAAAATGCCAACCTTTATGGCCAGGCTGGAGGTACAGCAAGTGGAATGAGGTATACCTCTAGAATTGCAGTTTATAAAGTATGCTGGCCAAAAGGTTGTGCTAACTCTGACATATTAGCCGCGGTGGACCAAGCAGTTTCTGATGGGGTTGATGTATTGTCACTCTCTTTAGGGAGTGATCCCAAACCTTTTTATGATGATTTAATTGCCGTAGCTTCATTTGGGGCAACCAAGAAAGGGGTTTTTGTTGCTTGCTCCGCAGGCAATAAAGGGCCCTCTCCATCAACAGTTTCAAATGGTGCTCCATGGATCATGACAGTTGCTGCTAGCTCCACTGACCGAAGCTTTCCAACGGAAGTAATGCTTGGAAATGGAAAATTTTTCAAAGGGACATCTTTATATCAAGGCAACCTGACAAACCAATTGCCCCTTGTATTTGGCAAATCGGCAGGTACCAAAAAAGAAGCACAGCATTGCAGTGAAGGCTCCCTTGATCCAAAGCTTGTGCATGGGAAAATAGTTGTTTGTGAAAGAGGAAAAAATGGAAGAACTGAAATGGGAGAGGTAGTGAAAGTGGCTGGTGGGGCAGGAATGATAGTACTTAATGCTGAAAATCAAGGAGAAGAAATTTATGCTGATCTTCATATTTTGCCAGCCACTTCTTTAGGGGCCTCAGAAGGTAAGACGATTGAAACCTATATTCAATCTGATAAAAAACCAACAGCTTCAATTTCCTTTATGGGAACAAAGTTTGGTGACCCTGCACCAGTAATGGGAGCATTTTCTTCTAGAGGACCAAGTATAGTGGGGCCAGATGTGATCAAGCCAGATGTAACTGCACCTGGTGTGAACATCTTGGCTGCTTGGCCACCTAAAACTAGCCCAAGTTTTATCATGAATGACAAAAGAGAAGTACTATTTAACATACTTTGGGGTACCTCAATGTCTTGTCCTCATGTTAGTGGCATAGCAGCACTGCTTAAGTCTTTGCACAAAGATTGGTCACCTGCAGCTATCAAATCTGCTTTGATGACTACTGCTTACACATTGAACAACAAAGGAGCTCCAATTTCAGACATGGCCTCAGATAATAAAGCATTTGCTACACCCTTTGCATTTGGTTCAGGCCATGTTAACCCTGTAAGTGCTTTTGATCCAGGGTTGGTCTATGATATCGGCACTGAAGACTACTTAAATTATTTATGCAGCCTAAATTATACCTCTTCGCAGATTGCTTTGTTATCAAGAGGTAAGTTTGCATGTTCTAAGAAAGCAGTTCTTCAAGCTGGTGACTTGAACTACCCTTCATTTGCTGTTCTTTTCGACAGAAGTGCCTTAAATGCTAATGTGACATACACGAGAGTTGTCACAAATGTTGGAAAACCCCAAAGTGCTTATGCAGTTAAGGTGAAACAGCCAGATGGAGTATCAGTTACTGTTGAACCAAGGGTATTGAAGTTTGAAAAAGTGGGTCAGAAATTGAGCTACAAGGTTACATTTTTGGCAGTTGGAAAAGCAAGAGTTGCGGGTACCTCCTCGTTTGGGTCACTGATTTGGGTATCTGGCCGATATCAAGTTAGAAGTCCTATAGCATTAACCTGGAAATAG
Predicted protein sequences of Glyma18g52575
>Glyma18g52575.1   sequence type=predicted peptide   gene model=Glyma18g52575   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDQTKIKASNQDSTKPWYESIIDFISESSMQEDDEEDILAPQLLYTYETSMFGFAVHLSKKHLKYLNQVDGFLSAIPDELSTLHTTYSPHFLGLRNGRSLWSASNLATDVIIGVLDSGIWPEHISFQDSGMSPVPSHWKGVCEKGTKFSSSNCNKKLIGARTYYKGYEKFFGKKINETVDYLSPRDSEGHGTHTASTAAGRVVKNANLFGQARGTASGMSDSIAIASFGATKKGVFVACSAGNSGPFPSTVGNGAPWITTVAASSTDRSFPTKVKLGNGKTFEGSSLYQGKKTNQLPLVYGKSAGAKKEAQYCIGGSLDPKLVHGKIVACERGINGRTEKGEEVKVAGGAGMILLNNEYQGEELFADPHILPATSLGASASKTIRSYSQSVKKPTASISFMGTRFGDPAPVMAAFSSRGPSLVGPDVIKPDVTAPGVNILAAWPSKISPSFLMSDKRKVLFNILSGTSMSCPHVSGIAALLKSFHKDWSPAAIKSALMTTAYTLNNKGAPISDMASDNSPFATPFAFGSGHVNPVNASDPGLVYDISTKDYLNYLCSINYTSSQIALLSRGKFVCSKKTLLQAGNLNYPSFSVLFGRSASNASVTYRRVVTNVGNPQSAYAVKLEQPNGVSVTVEPRKLKFEKVGQKLSYKVTFLSIGGARVAGIMIFRILFLFLAFMATNSIAVADQQTYIVHMDKTKLKVSIHSHDRSKPWSESIIYFISEASMQEEEEKEEILAPQLLYTYETTMFGFAAQLSKKHLKYLNQVDGFLSAIPDELSTLHTTYTPHFLGLDNGSALWSASNLASDMIIGVIDSGIWPEHISFQDSGLSPVPSHWKGVCEQGTNFSASDCNKKLIGARTYFKGYEKVFGKLNETVSYLSPRDSEGHGTHTASTAAGNVVKNANLYGQAGGTASGMRYTSRIAVYKVCWPKGCANSDILAAVDQAVSDGVDVLSLSLGSDPKPFYDDLIAVASFGATKKGVFVACSAGNKGPSPSTVSNGAPWIMTVAASSTDRSFPTEVMLGNGKFFKGTSLYQGNLTNQLPLVFGKSAGTKKEAQHCSEGSLDPKLVHGKIVVCERGKNGRTEMGEVVKVAGGAGMIVLNAENQGEEIYADLHILPATSLGASEGKTIETYIQSDKKPTASISFMGTKFGDPAPVMGAFSSRGPSIVGPDVIKPDVTAPGVNILAAWPPKTSPSFIMNDKREVLFNILWGTSMSCPHVSGIAALLKSLHKDWSPAAIKSALMTTAYTLNNKGAPISDMASDNKAFATPFAFGSGHVNPVSAFDPGLVYDIGTEDYLNYLCSLNYTSSQIALLSRGKFACSKKAVLQAGDLNYPSFAVLFDRSALNANVTYTRVVTNVGKPQSAYAVKVKQPDGVSVTVEPRVLKFEKVGQKLSYKVTFLAVGKARVAGTSSFGSLIWVSGRYQVRSPIALTWK*






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