Glyma18g52560 - SoyBase

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Report for Sequence Feature Glyma18g52560

Feature Type:	gene_model
Chromosome:	Gm18
Start:	61138519
stop:	61147077
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g52560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G00240	AT	Annotation by Michelle Graham. TAIR10: phospholipase D beta 2 \| chr4:106380-110718 REVERSE LENGTH=927	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0046470	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylcholine metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004630	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipase D activity	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
KOG1329	KOG	Phospholipase D1	JGI		ISS
PTHR18896	Panther	PHOSPHOLIPASE D	JGI		ISS
PTHR18896:SF15	Panther	PHOSPHOLIPASE D BETA	JGI		ISS
PF00168	PFAM	C2 domain	JGI		ISS
PF00614	PFAM	Phospholipase D Active site motif	JGI		ISS
PF12357	PFAM	Phospholipase D C terminal	JGI		ISS
UniRef100_G7L1G0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phospholipase D n=1 Tax=Medicago truncatula RepID=G7L1G0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F556	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F556 related cluster n=1 Tax=unknown RepID=UPI000233F556	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g52560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g52560

Paralog	Evidence	Comments
Glyma02g10360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g52560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g288600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g52560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g52560

Limit To All Plant Sequences

>Glyma18g52560.1   sequence type=CDS   gene model=Glyma18g52560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAATTATGGATCATCTTCTCCATACCGGTATCCAAACCAATATATGTACCCTCCCAATCCTCACCAACCGTACCCTCCTCCTCCAGGTTCAGCTCCTGATCCATATGCACAACATGTTCCTTATCAACCATATCCTTACCTTTCTTCACATTCCTTCAACTATTCCTATCCTCCACCTCCTAGATCTTCCTCACATTCTGGCCATTTTGAGTATTCCTATCCCCCTCCTCACCCTCCACCATCTTATGCTAATCCTCCTTACCCTTATCCCTACCATGTTCCTCCACCAAATCATGATCCTCCCAAGCCTTCCCTTTCACACCATGCTAGTTTCCAACATGAACCATCTCATTATTATTATCAACAACCAAACGACGCCTATTCAGCTTCAGCTCCTCAAGTCCATCCTGATGTCCATTTGCGCACCAACAGCTTCTCTGGTCCCTACTGGCATGAGAACACTAGCACTGCAGGAGATGAAGTGTCACAAACTAGTGACAATTCCAAGCCTTCTCAGGGTTCTGCTTACCCGTCTTTGGATGATCTTATGAGTAATGTTCGATTGTCTGATGACCAGCCAACTGCTCCTGCATCACCACCTGCGCCTGCAGGGCAACCATTTATGCATTCCATTTCAGTTCCAAAGTTGCAACAGAAGAGAGAGGAGTTTTATGGATATTCGAATAACTCCTTCTCGGGGTGGGGATCCTCCTACCACAGTCGGGTGGATTCGTCTAGACTTTCAGATTTTTCTGGCTCATTTAATGAATCAGTGCATAGTCAGAGTTTGCAGATTGTTCCAGTGCAGAATAAAGGGTCCTTGAGAGTTTTGCTCCTACATGGAAATTTAGATATATGGGTCCATGAAGCCAAGAATCTTCCAAATATGGACATGTTTCACAAAACATTAGGAGATATGTTTGGTAAATTACCAGGCAGTGTGGGCAACAAAATTGAAGGAACTATGAATAAGAAGATTACTAGTGATCCTTATGTATCAATTTCAGTATCCAATGCTGTAATTGGGAGGACTTACGTCATTAGCAACTCTGAAAATCCTGTTTGGTTGCAGCATTTCTATGTTCCTGTTGCATATCATGCTGCTGAAGTGCACTTTCTTGTTAAAGACAGTGATATTGTGGGTTCACAGCTCATTGGCATTGTGGCAATTCCAGTGGAGAAAATATACTCAGGAGAAGTAGTTGAAGGAACCTTCCCTATCCTGAATAATAATGGGAAGCCTTGTAAGCAAGGTGCTGTCCTTACCCTATCCATTCAGTACATACCTATGGAGAAATTGAGCATTTATCACCAAGGAGTTGGAGCAGGGCCAGAATACATTGGGGTTCCCGGCACATATTTTCCTTTGAGGAGGGGTGGAACCGTTACTCTGTATCAAGATGCTCATGTTCCAGATGGCAGCCTCCCTAATGTGTTGCTTGACAGTGGAATGTATTATGTGAATGGAAAGTGTTGGCAAGATATCTTTGATTCCATAAGTCAAGCTCGGCGTTTGATTTATATTACAGGATGGTCAGTGTGGCACAAAGTAAGGTTGGTTAGGGATGCTGCTGGTTATGCTTCAGATTATACATTGGGTGATCTTCTAAGGTCAAAGTCACAGGAAGGAGTAAGAGTGCTTCTCCTTATCTGGGATGATCCTACATCAAGAAGCATTTTAGGTTATAAAACAGATGGTGTCATGGCAACTCATGATGAGGAGACTCGTAGATTTTTTAAGCACTCTTCAGTGCAAGTGCTTCTTTGTCCTCGCAGTGGCAAACGACATAGCTGGATCAAGCAAAAGGAAGTTGGAACAATATATACACATCATCAGAAAACTGTGATTGTGGATGCTGACGCCGGAAATAATAGAAGAAAAATTATAGCATTTGTTGGTGGACTTGATTTGTGTGATGGGCGATATGATACTCCCCACCATCCTCTTTTTAGAACATTGAATACAATACATAAGGATGACTACCACAACCCTACTTTCACGGGCAATGCTGGAGGTTGTCCACGGGAGCCATGGCATGATTTGCATTCTAAAATTGATGGTCCAGCAGCTTATGATGTTTTGACTAACTTTGAGGAGCGCTGGTTAAAAGCTTCAAAACCTCACGGGATTAAAAAGTTGAAAATTTCAGATGATGATGCTTTGCTAAGGCTGGAAAGAATTCCAGATGTTATTGGCATCAATGATGCTCCAAGTGTTGGTGAAGATGATCCTGAAGTTTGGCATGCTCAGATATTTCGTTCAATTGATTCAAATTCCGTTAAGAGGTTTCCAAAGGATCCAAAAGATGCAACAAGCAAGAACCTAGTATGTGGAAAGAATGTGCTGATTGACATGAGCATACATACAGCATATGTTAAGACCATTCGTGCTGCACAACATTACATTTATATAGAGAATCAATATTTCATTGGCTCTTCATACAATTGGAGTCAACATAAAGACCTAGGTGCTAATAACTTAATCCCAATGGAAATTGCTCTAAAGATTGCTGAAAAGATAAAAGCAAATGAGAGATTTGCAGTGTATGTTGTTATTCCAATGTGGCCAGAAGGTGTTCCAACAGGGGCTGCCACACAAAGGATTCTATTTTGGCAGAATAAAACAATGCAAATGATGTATGAGACAATTTACAAGGCTTTGGTTGAGGCAGGGCTTGAAGCAGCATTTTCTCCACAAGATTATTTGAACTTTTTCTGTCTTGGTAATCGAGAGGCCGGGAATTTGTATGATAATGTCAGCATGACCGGAGCTCCTCCCCCAGCAAATAGTCCACAAGCAGCCAGCAGAAATAGCCAACGCTTCATGATTTATGTTCATTCTAAAGGCATGATAGTTGATGATGAATATGTGATATTGGGGTCTGCAAACATCAACCAGCGCTCCATGGAAGGAACAAGGGACAGTGAGATTGCAATGGGAGCCTATCAACCTCATCATACTTGGGCAAGAAAACAATCTTATCCACATGGACAAATCCATGGATATAGGATGTCACTTTGGGCAGAACATACAGGAACAATTGAAGAGTGCTTTTTGAAACCGGAGAGCCTTGAATGTGTAAGAAGGGTTAGAGCAATGGGTGAAATGAACTGGAAACAATTTTCAGCTAATGAAGCAACAGAGATGAAAGGGCATCTAATGAAATACCCAGTAGAAGTTGATCGAAAGGGCAAGGTTAGACCCCTTCAGGACTGTGAAGAGTTCCCGGATGTAGGAGGAAAAATAGTAGGATCTTTTCTTGCCATGAAGGAGAACCTAACCATTTGA

Predicted protein sequences of Glyma18g52560

Limit To All Plant Sequences

>Glyma18g52560.1   sequence type=predicted peptide   gene model=Glyma18g52560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNYGSSSPYRYPNQYMYPPNPHQPYPPPPGSAPDPYAQHVPYQPYPYLSSHSFNYSYPPPPRSSSHSGHFEYSYPPPHPPPSYANPPYPYPYHVPPPNHDPPKPSLSHHASFQHEPSHYYYQQPNDAYSASAPQVHPDVHLRTNSFSGPYWHENTSTAGDEVSQTSDNSKPSQGSAYPSLDDLMSNVRLSDDQPTAPASPPAPAGQPFMHSISVPKLQQKREEFYGYSNNSFSGWGSSYHSRVDSSRLSDFSGSFNESVHSQSLQIVPVQNKGSLRVLLLHGNLDIWVHEAKNLPNMDMFHKTLGDMFGKLPGSVGNKIEGTMNKKITSDPYVSISVSNAVIGRTYVISNSENPVWLQHFYVPVAYHAAEVHFLVKDSDIVGSQLIGIVAIPVEKIYSGEVVEGTFPILNNNGKPCKQGAVLTLSIQYIPMEKLSIYHQGVGAGPEYIGVPGTYFPLRRGGTVTLYQDAHVPDGSLPNVLLDSGMYYVNGKCWQDIFDSISQARRLIYITGWSVWHKVRLVRDAAGYASDYTLGDLLRSKSQEGVRVLLLIWDDPTSRSILGYKTDGVMATHDEETRRFFKHSSVQVLLCPRSGKRHSWIKQKEVGTIYTHHQKTVIVDADAGNNRRKIIAFVGGLDLCDGRYDTPHHPLFRTLNTIHKDDYHNPTFTGNAGGCPREPWHDLHSKIDGPAAYDVLTNFEERWLKASKPHGIKKLKISDDDALLRLERIPDVIGINDAPSVGEDDPEVWHAQIFRSIDSNSVKRFPKDPKDATSKNLVCGKNVLIDMSIHTAYVKTIRAAQHYIYIENQYFIGSSYNWSQHKDLGANNLIPMEIALKIAEKIKANERFAVYVVIPMWPEGVPTGAATQRILFWQNKTMQMMYETIYKALVEAGLEAAFSPQDYLNFFCLGNREAGNLYDNVSMTGAPPPANSPQAASRNSQRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDSEIAMGAYQPHHTWARKQSYPHGQIHGYRMSLWAEHTGTIEECFLKPESLECVRRVRAMGEMNWKQFSANEATEMKGHLMKYPVEVDRKGKVRPLQDCEEFPDVGGKIVGSFLAMKENLTI*

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