Glyma18g52540 - SoyBase

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Report for Sequence Feature Glyma18g52540

Feature Type:	gene_model
Chromosome:	Gm18
Start:	61115413
stop:	61136481
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g52540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G12590	AT	Annotation by Michelle Graham. TAIR10: unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 50 Blast hits to 41 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). \| chr3:3996473-4003657 REVERSE LENGTH=1184	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
UniRef100_UPI000233F555	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F555 related cluster n=1 Tax=unknown RepID=UPI000233F555	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g52540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g52540

Paralog	Evidence	Comments
Glyma02g10371	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g52540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g288500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g52540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g52540

Limit To All Plant Sequences

>Glyma18g52540.2   sequence type=CDS   gene model=Glyma18g52540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGATTCCGAATCCAATCGAACCCAATCCAACAATGTCTTCCAGCTTCAGCTCCTCGCGCCCGCTGCAGCAGTTAATTGCCGTCTCCCGCCTCAAATCCTCCACAGTCAAGAAGCTGCCGGAACCCTTGCGCCGTGCCGTCGCGGATTGCCTCTCCTCGCCTCTCTCCCCCTCCAATGAACCTTCTAGAACTCTTCAGGATTATCTGAAAGCCCTTGCAACCACAGACTTGGCTTATAATGCAATTCTGGAACATACTATTGCAGAGAGGGAGCGCAGTCCTGCGGTAGTCACAAGGTGTGTGGCACTTTTGAAGCGGTATCTCCTAAGATACAAACCAAGTGAGGAGACATTAATTCAGATAGATCTCTTTTGCTCAACCATGATTGCTGAATGTGATATTAACCCAACTCAGCCGTGGTCACTAGCTTTGAATCGACAATCTGGTGCATCAAATACATCTCCTTTACCTGTATCTACCTTTGCCTCTGAGTCCCTTGTAAAGTCATTAAGTTATGTGCGTTCCCTAGTTGCTCAACACATTCCTAAACGGCTTTTTCAACCAGCTTCATTTGCTGGACCACCTTCATCGGGACAGTCACTACCGACATTGTCATCTTTGCTGAGTAAATCCTTCAATTCCCAACTAACTCCTGCAAGTATTCCAGAAACACCAAGTTCTGCAAGTGTTCCAAAAACACTAGAGAAGGATTCAAGTGCTCTATCTGTTTCAAGGTTATCAAAAATCGAAAAAGCTAATGAAACAGATGAACTAGGGTTCATTGCTCATGATGTTCTAAAATGGCGCTGGCTTGAGGAACCACAGTCATCATCTATAGGGACTGAAAATGATCGAGCTGTGAATTCTCAAGACATGACAGCACATAGTTTCTTAGAAATAGGTGCTGCAGCTCTACTTGTAGGAGATATAGAATCTAAGATGAAGGGGCAACCATGGAAATTTTTTGGAACCGATGATATGCCTTACCTGGATCAGCTATTGCAGTCTTCTCCTGTAACACCAATAACTAATTCTGACTCTGCTCGCCCCCATCTGAGAGCAATAACAGCATCTAAACGCACAAAACCGGGCTCTCGTCAGATTTGGGAGGATTTTCCTGTTACTACATTCCGTCCCAGAGCTCGACAGCTTTTCCAGTATCGTCATTACAGTGAGCAACAACCTCTGCGATTGAACCCCGCTGAGGTACAGGATGTTATTGCTGCAGTTTGCTCAGAGGCTTATTCCCCGAATACCAATGCTACTACAGCATCAACTAGACTAAGTAATAACAGTGGAAAACCATCAACGGATGTGGCTGTGAGCGTCCTTATTAAACTAATTATTGACATGTATGTTTTAGATTCTCAGACAGCTGCTCCTCTCATTCTTTCTATGCTTGAGGATATGCTTAGTTCTTCTAAAACAGCATGCAGGGTTCGTGCTTTTGATTTAATTCTAAACCTTGCGGTTCATGCACATCTCCTAGAACCGATAATTGCTGATGATGCTTCCACTATTGAAGAAGAATATTCTCAAGAATCCTATTATGACAGTGACACTCAAGTTATGGTGCAAGGAAGCAGTAAAGGAAGTCCTCAGAACAAATCAGACACAGGCTCTGCTATTGATAAGTTTGAGTCTTGGATTTTAAATATTCTGTATGAGATACTACTTCTTCTTGTTCAGTCTGAAGAAAAGGATGAATCTGTTTGGGCATCTGCTCTCAGCTGTTTGCTGTATTTTGTCTGTGATAGAGGGAAGATCAAGAGAAACCGTTTGCGTGGTCTTGACATAAGGGTTCTGAAGGCACTCGTAAAAAGCAGTAGGGAGAACTCCTGGGCAGAGTTAGTTCATTGTAAGCTTATTTCCATGTTAACCAACATGTTTTATGAAGTTGCTGAGTCTGTACCTGGCAAACCAAAGTTTCTTGTGGATCAACTTGATCTGATCGGAGGGGTTCAATTTATTTTTATTGAGTATTCCCTTGCAAACTCAAGAGAAGAGAGGAAAAATCTGTATTTGGTGCTTTTTGATTACATTCTGCATCAAATAAATGAAACATGCATTGCTAGTGGTGTCAATGAATATAATGATGATGAGATCCAACCTCTTGCTGCTCTTCTTGCTCAAACAAATGCGCCTGAGGCATTTTATATTTCTGTTAAACTTGGGGTAGAAGGTATTGGAGAGATTCTGAGAAGATCAATTGCATCAGCACTGTCCAGATATCCCAACAGTGAACGACTAAATATGCTACTGGAAGTTGTAGCAGAGAAATTTGATTCTGTAATAAGTACATTTACTCATTTGGACAAAGAGTTCTCTCATATGAATCAGATAACCAAATCTCTCAAGTTTCTGGAAAATATGGAAGGTGTGATTATGAGAAATGGCATTGGTTTGCAGGCAAAGCACTCATGGGCTACTTTACATTCTCTTCTTCACTCTGAGAGAATTTCTTACCGTCAAAATGGGTATATCTGGTTAGGTGATCTGCTTATTGCTGAAATTAATGGAGAAAGAGATGGAAATATATGGTCGAGTATCACATACTTCCTGCAGAAAATTGCTCAAGCTGGAACTCAAGATTCTTCAAATACATCAGATGTTCCTTTGCCTATTTTACTTATGTGTGGCCTTCTAAAATCAAAATACTGCTACATTAGATGGGGATTTTTGTTTGTTCTTGAAAGGCTTCTCATGAGATGCAAATTTTTGTTAGATGAGCATGAAATGCAACAATCAAGCACCAGAGATCTGGGTCATGGGAAGAAAGATTGGCATCTTGAGAAAGCCAATGCAATGATTGACATAATGAGTGGAGCTTTGTCTTTGGTGTTTCAGATAAATGAAACAGATCGCATCAATATTCTAAAAATGTGTGACATACTATTCTCTCAATTGTGCCTAAGAGTTCCTCCTGCTGCAGCTCTTACCTTTGGAGATGATGTGCAACATGGCAGAAATTCAAATCACACTAATGTAAGCAAAAGGTTTGATGGTGATAATCATGTCAAACAAGATACTTTTCATTGGGATGGACACATGGAAGAAGCAAATAGAAGGTCCGGCTACCATAATAACTACCACCTGGATCATGAGACTGCATCAATGGCAGCACTTTTCCAAGGACGAGCTGTTGTCCCAATGCAATTAATTGCACGCGTCCCTGCTGCCATACTATATTGGCCACTAATTCAATTGGCTGGAGCAGCAACAGATGATATTGCATTGGGTGTTGCTGTTGGAAGTAAAGGAAGAGGAAACCTGCCTGGTGCTACATCTGATATTCGGGCCACACTTCTTCTACTACTTATTGGTAAATGCACAGCAGATCCTGTTGCTTTCCAGGAGGTTGGTCAGGAACAATTTTTTAGGGAACTTTTGGATGACACAGATTCAAGAGTGGCATATTATTCTTCTGCTTTTCTTCTGAAGCGAATGATGACCGAGAACCCAGAGAAATATCAACACATGCTTCAGAATCTTGTTGTTAAGGCTCAGCAGAGTAACAATGAAAAACTGTTAGAGAACCCGTATCTTCAAATGTGTGGCATACTTCAACTGGCAAATGATCTGGGGATTGACCTGTGA

Predicted protein sequences of Glyma18g52540

Limit To All Plant Sequences

>Glyma18g52540.2   sequence type=predicted peptide   gene model=Glyma18g52540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLIPNPIEPNPTMSSSFSSSRPLQQLIAVSRLKSSTVKKLPEPLRRAVADCLSSPLSPSNEPSRTLQDYLKALATTDLAYNAILEHTIAERERSPAVVTRCVALLKRYLLRYKPSEETLIQIDLFCSTMIAECDINPTQPWSLALNRQSGASNTSPLPVSTFASESLVKSLSYVRSLVAQHIPKRLFQPASFAGPPSSGQSLPTLSSLLSKSFNSQLTPASIPETPSSASVPKTLEKDSSALSVSRLSKIEKANETDELGFIAHDVLKWRWLEEPQSSSIGTENDRAVNSQDMTAHSFLEIGAAALLVGDIESKMKGQPWKFFGTDDMPYLDQLLQSSPVTPITNSDSARPHLRAITASKRTKPGSRQIWEDFPVTTFRPRARQLFQYRHYSEQQPLRLNPAEVQDVIAAVCSEAYSPNTNATTASTRLSNNSGKPSTDVAVSVLIKLIIDMYVLDSQTAAPLILSMLEDMLSSSKTACRVRAFDLILNLAVHAHLLEPIIADDASTIEEEYSQESYYDSDTQVMVQGSSKGSPQNKSDTGSAIDKFESWILNILYEILLLLVQSEEKDESVWASALSCLLYFVCDRGKIKRNRLRGLDIRVLKALVKSSRENSWAELVHCKLISMLTNMFYEVAESVPGKPKFLVDQLDLIGGVQFIFIEYSLANSREERKNLYLVLFDYILHQINETCIASGVNEYNDDEIQPLAALLAQTNAPEAFYISVKLGVEGIGEILRRSIASALSRYPNSERLNMLLEVVAEKFDSVISTFTHLDKEFSHMNQITKSLKFLENMEGVIMRNGIGLQAKHSWATLHSLLHSERISYRQNGYIWLGDLLIAEINGERDGNIWSSITYFLQKIAQAGTQDSSNTSDVPLPILLMCGLLKSKYCYIRWGFLFVLERLLMRCKFLLDEHEMQQSSTRDLGHGKKDWHLEKANAMIDIMSGALSLVFQINETDRINILKMCDILFSQLCLRVPPAAALTFGDDVQHGRNSNHTNVSKRFDGDNHVKQDTFHWDGHMEEANRRSGYHNNYHLDHETASMAALFQGRAVVPMQLIARVPAAILYWPLIQLAGAATDDIALGVAVGSKGRGNLPGATSDIRATLLLLLIGKCTADPVAFQEVGQEQFFRELLDDTDSRVAYYSSAFLLKRMMTENPEKYQHMLQNLVVKAQQSNNEKLLENPYLQMCGILQLANDLGIDL*

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