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Report for Sequence Feature Glyma18g52530

Feature Type:gene_model
Chromosome:Gm18
Start:61112207
stop:61114202
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g52530
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G02530AT Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:564332-565776 REVERSE LENGTH=290 SoyBaseE_val: 5.00E-15ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
PTHR19965Panther RNA AND EXPORT FACTOR BINDING PROTEIN JGI ISS
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI ISS
UniRef100_G7KWS3UniRef Annotation by Michelle Graham. Most informative UniRef hit: THO complex subunit n=1 Tax=Medicago truncatula RepID=G7KWS3_MEDTR SoyBaseE_val: 1.00E-15ISS
UniRef100_I1N546UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N546_SOYBN SoyBaseE_val: 1.00E-120ISS

Expression Patterns of Glyma18g52530
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g52530
ParalogEvidenceComments
Glyma02g10380 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g52530 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma18g52530
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g52530
>Glyma18g52530.1   sequence type=CDS   gene model=Glyma18g52530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGAAGTCGGGTCACATCTCAGTTTTTTCCCCCTCCTCGGTTGAGGTACATCAGGCTATATACCCAAATGGCTTTCAAATAATGCAAAAAATTGAAAAATTGTGTCTAACTTTCACAGCTGCTAGTGGGAGATCAAAGGGAACAGCAGAAGTTGTGTTCGTGAGGTACCATGATGCTTTAGCAGCCATCAAGAAATACAACAATATGAGGCTTGATGGAAAGCCATTGCAAATTGAGCTTGCTGGAACAAGTTCGGCTACTCCTGCTGTCACGCCTCTTTCTTCTCAGCCTTATATATTTCTTCATCTTTATAGTTTGAATTGTGAACTTATACATATGAGGAAGGGTTGGAGGTATTGGGTTCCGCAATGCTTTGCTCAGGGCCACCTTCCAAGGGGCCGTGGAGAAGAGAAGGACCATATTCGAAAGAGGTTCCACCGCACTCAGACTCAGAGGCCACGCAAAAGTAAATGGCTGGCAATTTTGGAAATGTGA
Predicted protein sequences of Glyma18g52530
>Glyma18g52530.1   sequence type=predicted peptide   gene model=Glyma18g52530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLKSGHISVFSPSSVEVHQAIYPNGFQIMQKIEKLCLTFTAASGRSKGTAEVVFVRYHDALAAIKKYNNMRLDGKPLQIELAGTSSATPAVTPLSSQPYIFLHLYSLNCELIHMRKGWRYWVPQCFAQGHLPRGRGEEKDHIRKRFHRTQTQRPRKSKWLAILEM*






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