Glyma18g52520 - SoyBase

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Report for Sequence Feature Glyma18g52520

Feature Type:	gene_model
Chromosome:	Gm18
Start:	61096684
stop:	61109225
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g52520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G39580	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Putative zinc-finger domain (InterPro:IPR019607); Has 249 Blast hits to 219 proteins in 85 species: Archae - 0; Bacteria - 144; Metazoa - 29; Fungi - 8; Plants - 50; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). \| chr2:16510540-16516948 FORWARD LENGTH=1577	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4839	KOG	Uncharacterized conserved protein	JGI		ISS
PF10650	PFAM	Putative zinc-finger domain	JGI		ISS
UniRef100_D7LD65	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Binding protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LD65_ARALL	SoyBase	E_val: 0	ISS
UniRef100_G7KWR6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Medicago truncatula RepID=G7KWR6_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g52520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g52520

Paralog	Evidence	Comments
Glyma02g10390	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g52520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g288300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g52520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g52520

Limit To All Plant Sequences

>Glyma18g52520.2   sequence type=CDS   gene model=Glyma18g52520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGACACCGTTAACCTCCGCGCCTCCACCACCACCTCGCCGGCGCCGGAGATTCCTAATCCCGACCTTCCTCCCCAAACCAGAGAGGAAGGCGAACTCTCTTCCGACGACGACGACGACGAAAACCTTGATAGCTCTACTGTGCAATCCATCCCTGCTGTAGGGTCTGGTTCTGTTCCACTGGTGCAAAAGAGTACACAAAACGTTCAGGGTGGCTCCAGTAATGTACAGTTGCAAACGAATAGACAACCAACTGCACAGAAGGACATAAAAAAGAACCAATTACCCCCTAAATCTTCTCTGTGGACTGGTCATGTGGGCACTGATAAAAATCTTGTCATAAGCTTCTCTGATGATGACAGTGGTAGCGACTTTGAAACTAAAGGCAATGCATCTAGGTTGGATAGCAGTACAAAGAGGACTAGCTCATCCTTGGAAAAACCTAACAAGTTACGGCAAACAAGTTTACCCAAGGAAGTGCCCAAGAGATTATCCTTAAGTCGCACATTTGTTTCATCATTGACCAAAATCCCTGGTTCTAATTCTAAGGGTGTTGGATCTGTGCCACTAGTACAAGGATCACGAGCTAGAAATTTCAATCCAGTGAACAAAAATTTAGCAAACCGAGAGCGTGGACGTGATCAAGGAGTGGTGTCAAATGACAATAAACTTCAGGATTTGCGGCAACAGATTGCGCTTAGGGAAAGTGAACTCAAGCTGAAGGCAGCCCAGCAAAATAAGGAGAGTGCTTCAGTTTTGGGTAGGGACCACAGTGCCATCAACTCAAAGAATATGGCTAGAAAAAGTACTCCAGTTTCCTCTGGACCTGCACAATTGGAGCCAAAAGAGCCAGATAGGAAGCGCTTGAAAGTTAGCACATCATATGGTACCTCTCAAGCTGTTGATAGTCAGCAAGAAGTTCCTGTTGTTAAATCTCTGTTGCCACCAAAAGATTCTACGTTAGAAAACTATCATCCTCAGGAGAGAAACAAAATTGACCATGGCAAAAAAGAGATTCCATTATGTAGAGCAGAGCCAAAAACTATCACATCACAAAAGCAACCTGACAAACATCTTGACAACTCATTAGAAAATATGCCTCGTAGATCAAGAGACGGTGACGGCAATTATGGTTGCAATCAAACCGAGAAGAGTAGTAGGCTGGTGGACCCTTCTGTTGCTTTCAACCAAAACGCATTGCCAGCAAATATGAGTTCCAATAGTGTGCCAAAAAATTTCGAAGCATTAAGCAATGCAGTTCTTTTGAATCATAATGGCAATGTAAATGTCTCAGAGCATAACAGTATAGATTTACAGTCATTTTTTGGTATGGAAGAATTGATAGACAAGGAACTGGAGGAAGCTCAAGAACACAGGCACAAATGTGAAATTGAAGAAAGAAATGCACTTAAAGCATATCTTAAAGCTCAGAGGTCTTTGCTTGAGGCTAATGCTCGATGCACCAATCTTTATCATAAAAGGGAATTGTATTCCGCCAAGTTACGATCTTTAATTTTAAACAATTCTGGCTTCTCTTGGTCTTCAGGGCAGCACCAACATCCTGATATAGGGTTGGATTTCTTACCTGGACTTGGATATGAAATGCCCACATCAAGCTGTCAAAGGCAGGCTGACTATAACGATATTAACAATCCAAGTTTTGATTCTAATAATCGAGGCATCAATAATAGGCATTCCAATATATCGAATCACCATGTTACTGGAGCAAATTTAGGGTCTGAACCTTGTGGTGAACCAGATGCCAGTACTTCAGAGCCATTGCCTCAAAGGGATAATTATGCTGCAGATGGATTTTACTCTCCTTCGGATGAATTAGATACAGCAGCTAATGAAAATGAAGAAATTTCTCCACCTGGACATGTTTCTAATCATCATGATGCTGAGTATCATAGAAAACAAAACTCAAAGTCCAAATTAGTGGACACAGATACGACTTCAAATGCAAATTTTTCCAATGATAGTCCCCAGGATTCTTTGCTTCTTGAAGCAAAATTAAGATCTGAATTATTTGCACGATTCGAGGCAAGAGCTAAGAAGAGTGGCAATCCATGTGATGATGTAGAGCCTGCTGCTGAAAGAGGGGCTGAAAATGAGGTTGGAAATGAGAAAACCCAGGTGCATAAAAATGTTGCTGTTCCATTCTCTAGGGCGGAAGATACTGATGTTAAAGGCATTGAGAGTCCTGAAAGGAGCATCTTTGTGGATTTGAGGGATATTCAAAGTCAGCAAAACATTGGTGGGAATTCATTGAATGTCAACTACAGCATTGGTTCAAGAGATATGCCTTGTCTTACAAATAAAGTGAACATCCCGCTTTTGATTTTTAGGAGTGCATTCAGTGATCTGAGAGAAATGTTTCCATTCAATTCAAATCAATTACAGAGTAAAAATATGTTTATTCATGCTAATGATGGTCAAAATGAAAATGCTACTTCTCTCAGTTCTGATGAAACAAAGTCTAGCGATGTGTTAGCAATCTCCATGCCTGTCACTGTAGGAAATTTAATCTCAGATGACAGCTCTTACAGCTGCAGTACTTCAGTTGATCCATTTTGGCCGCTTTGCATGTATGAACTGCGAGGAAAATGCAACAATGATGAGTGTCCCTGGCAGCATGCTAAGGACTATGGTGATAAAAACATTCAGCACGCTGGTTCTAAAAATGAAGATTGTCAAGGTAGATTACCATTGCCTCTACAGAACGCTAATGGTGTGGCAAAAGTTCCCAAGTGTTACAAAGCTACGATTCTGCCAACTTACCTTGTTGGTTTAGATACTCTGAAAGCAGATCAATTTGCATATAAACCTGTTGTGGTACATAGAAATGCTCAATGCTGGCAGAAACATTTCACCCTTACTTTAGCAACATCAAATCTGCTTGGAAATGGTTTACCTGCTGATGGTCCATTATTGCATGGTGGTGATGAACGCATAGAGGTCCATGGGGCATGTAACACACAATTATCTTCTTTTCATTGGAGAACTGGAGCTGGGAATCAAATTAAGCAGGCTATGGCTGACACTGAACAAGTTGTTGAGATGGCTCTTCTTATTCTCAACCAGGAAATTAATAAATTGCAGGGTGTAAGGAAGGCTCTGTCTGTGCTGTCCAAAGCTCTGGACAATGATCCAACATCTGTGGTTCTCTGGATTGTTTATCTACTCATTTACTATGGAAATTTGAAGCCAAATGAAAAGGATGACATGTTCTTGTGTGCGGTTAAGCTCTGTGAAGAATCTTATGTGCTGTGGCTCATGTACATCAATAGTCGGGGGAAGCTTGCTGACCGATTGGTTGCCTATGATACTGCTCTTTCAGTGCTCTGTCAGCATGCAGCTGCCAGTCCCAAGGACATAATACATGAAAGTCCATGCATCTTAGACCTGTTTTTACAGATGATGCATTGCTTATGCATGTCAGGGAATGTTGAGAAGGCCATTGAAAGAAGTTATGGAATATTCCCTACTACAACAAAATCCAATGAGCCTCATCATCTGTCACTCTCAGAAATACTCAATTGCTTAACAGTTTCTGACAAATGTGTATTCTGGGTTTGTTGTGTTTACTTAGTTATTTACAGGAGACTGCCTGATGCTGTTGTTCAGAAGTTTGAATCTGAGAAAAGTCTCCTTGATATTGAATGGCCCGTTGTCAGTTTATCTGAAGATGACAAGGAGATGGCTATTAAACTTGTGGAGACAGCTGTTGAATCTATTGATTCTTTTGTCTATAGTGAATCTGTAAAAAGTGAAGTTAATCTTAGGTCTGCTCAACTTTTTGCACTCAATCATATCAGATGCATGGCTGCTCTTGATAACAAAGAATGCTTTAGAGATTTGCTGGATAAATATGTTAAGCTGTATCCTTCCTGCATAGAATTGGTCCTGGCATCAGCTCGTATACAGAAACAGGATATTGATGTTGATGGTTTCATGGGATTTGAGGAAGCCATTAACAGATGGCCAAAAGAAGTTCCTGGAATCCAGTGCATCTGGAATCAGTACATTGAAAATGCTATCCACAATCGAAGAATTGATCTGGCAAAAGCAATTACAGTCCGGTGGTTCAAGTGTATTTGGCAAGTACAAAATCTCCCAAATGGAGGGAAGGAGATCACTGATGATGGTAATTCTTGTGGCTCATTGGGATTGGATTCAAAATCTGTTTCAGACAGATTCAGTTCTGATCATAAACAGATAGATATGATGTTTGGATTTCTTAATCTGTCTCTCTATAATTTTTTACAGAATGATAAAACAGAAGCATGCATAGCTTTTGACAAGGCTAAGAGTACTGCTAGTTTTGGAGGTTTAGAACAATGTATGAAGACATATGTGATGTTTCTGGTTTATGATGCGTGGAGCTTGAAGGAGGATGGTTCTGATGGTGCCATCAAGAGGATTTTGGAGTTGTATGCAGATGGTTCCTCTCAGGCATTGCTAGTCCCCAAGGTGTTGACCAGAAAATTTGTTGACAACATCAAGAAGCCAAGAGTACAGCATCTTATTGGTAACATATTAAGTCCAGTTTCATTTGACTGTTCTCTGCTAAACTTGATACTTCAGTCATGGTTTGGTTCATCTCTTTTACCCCAAACTGTTAGTGACCCCAAACATCTGGTGGATTTTGTTGAAGCCATTATGGAGGTTGTTCCTCACAACTTCCAATTAGCTATTGCTGTTTGCAAGCTACTAACCAAGGAATACAATTCTGACTCAAACTCAGCCAGTCTATGGTTTTGGGCTTGTTCAAACCTGCTAAATGCAATTTTAGATGCCATGCCAATACCACCTGAATACGTCTGGGTGGAGGCTGGAGAGCTTTTGCACAATTCTATGGGCATTGAGACAATATGTGACAGGTTTTATAGAAGGGCTCTATCAGTGTATCCATTTTCTATCATGTTGTGGAAATGCTTCTATAAGCTGTATATGACCAGTGGAGATGCAAAAGATGCTGTTGATGCAGCAAAACAAATGGGTATTGAACTGTTAACTAAAGATTTAGGAACCGATTGA

Predicted protein sequences of Glyma18g52520

Limit To All Plant Sequences

>Glyma18g52520.2   sequence type=predicted peptide   gene model=Glyma18g52520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDTVNLRASTTTSPAPEIPNPDLPPQTREEGELSSDDDDDENLDSSTVQSIPAVGSGSVPLVQKSTQNVQGGSSNVQLQTNRQPTAQKDIKKNQLPPKSSLWTGHVGTDKNLVISFSDDDSGSDFETKGNASRLDSSTKRTSSSLEKPNKLRQTSLPKEVPKRLSLSRTFVSSLTKIPGSNSKGVGSVPLVQGSRARNFNPVNKNLANRERGRDQGVVSNDNKLQDLRQQIALRESELKLKAAQQNKESASVLGRDHSAINSKNMARKSTPVSSGPAQLEPKEPDRKRLKVSTSYGTSQAVDSQQEVPVVKSLLPPKDSTLENYHPQERNKIDHGKKEIPLCRAEPKTITSQKQPDKHLDNSLENMPRRSRDGDGNYGCNQTEKSSRLVDPSVAFNQNALPANMSSNSVPKNFEALSNAVLLNHNGNVNVSEHNSIDLQSFFGMEELIDKELEEAQEHRHKCEIEERNALKAYLKAQRSLLEANARCTNLYHKRELYSAKLRSLILNNSGFSWSSGQHQHPDIGLDFLPGLGYEMPTSSCQRQADYNDINNPSFDSNNRGINNRHSNISNHHVTGANLGSEPCGEPDASTSEPLPQRDNYAADGFYSPSDELDTAANENEEISPPGHVSNHHDAEYHRKQNSKSKLVDTDTTSNANFSNDSPQDSLLLEAKLRSELFARFEARAKKSGNPCDDVEPAAERGAENEVGNEKTQVHKNVAVPFSRAEDTDVKGIESPERSIFVDLRDIQSQQNIGGNSLNVNYSIGSRDMPCLTNKVNIPLLIFRSAFSDLREMFPFNSNQLQSKNMFIHANDGQNENATSLSSDETKSSDVLAISMPVTVGNLISDDSSYSCSTSVDPFWPLCMYELRGKCNNDECPWQHAKDYGDKNIQHAGSKNEDCQGRLPLPLQNANGVAKVPKCYKATILPTYLVGLDTLKADQFAYKPVVVHRNAQCWQKHFTLTLATSNLLGNGLPADGPLLHGGDERIEVHGACNTQLSSFHWRTGAGNQIKQAMADTEQVVEMALLILNQEINKLQGVRKALSVLSKALDNDPTSVVLWIVYLLIYYGNLKPNEKDDMFLCAVKLCEESYVLWLMYINSRGKLADRLVAYDTALSVLCQHAAASPKDIIHESPCILDLFLQMMHCLCMSGNVEKAIERSYGIFPTTTKSNEPHHLSLSEILNCLTVSDKCVFWVCCVYLVIYRRLPDAVVQKFESEKSLLDIEWPVVSLSEDDKEMAIKLVETAVESIDSFVYSESVKSEVNLRSAQLFALNHIRCMAALDNKECFRDLLDKYVKLYPSCIELVLASARIQKQDIDVDGFMGFEEAINRWPKEVPGIQCIWNQYIENAIHNRRIDLAKAITVRWFKCIWQVQNLPNGGKEITDDGNSCGSLGLDSKSVSDRFSSDHKQIDMMFGFLNLSLYNFLQNDKTEACIAFDKAKSTASFGGLEQCMKTYVMFLVYDAWSLKEDGSDGAIKRILELYADGSSQALLVPKVLTRKFVDNIKKPRVQHLIGNILSPVSFDCSLLNLILQSWFGSSLLPQTVSDPKHLVDFVEAIMEVVPHNFQLAIAVCKLLTKEYNSDSNSASLWFWACSNLLNAILDAMPIPPEYVWVEAGELLHNSMGIETICDRFYRRALSVYPFSIMLWKCFYKLYMTSGDAKDAVDAAKQMGIELLTKDLGTD*

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