SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G57450 | AT | Annotation by Michelle Graham. TAIR10: homolog of X-ray repair cross complementing 3 (XRCC3) | chr5:23274008-23274922 REVERSE LENGTH=304 | SoyBase | E_val: 4.00E-99 | ISS |
| GO:0000724 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination | SoyBase | N/A | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0006302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair | SoyBase | N/A | ISS |
| GO:0006312 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitotic recombination | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0007129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: synapsis | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0010212 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ionizing radiation | SoyBase | N/A | ISS |
| GO:0042138 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation | SoyBase | N/A | ISS |
| GO:0043687 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-translational protein modification | SoyBase | N/A | ISS |
| GO:0045003 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair via synthesis-dependent strand annealing | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003684 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: damaged DNA binding | SoyBase | N/A | ISS |
| GO:0003697 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: single-stranded DNA binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008094 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-dependent ATPase activity | SoyBase | N/A | ISS |
| KOG1564 | KOG | DNA repair protein RHP57 | JGI | ISS | |
| PTHR22942 | Panther | RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER | JGI | ISS | |
| PTHR22942:SF24 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF08423 | PFAM | Rad51 | JGI | ISS | |
| UniRef100_B9T088 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: X-ray repair cross complementing protein 3, xrcc3, putative n=1 Tax=Ricinus communis RepID=B9T088_RICCO | SoyBase | E_val: 5.00E-115 | ISS |
| UniRef100_I1N544 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N544_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma18g52510 not represented in the dataset |
Glyma18g52510 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g288200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g52510.1 sequence type=CDS gene model=Glyma18g52510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGGCAGAGAACCTATTGCAATTGCAACACCGCACCCAGAAGTGCACCCTGGGCTGTCCCGTACTCGATCGCTGCCTCGCCGGCGGCGTCCCCTGCGCCTCCGTCACCGAGTTCGTCGGCGAGAGCGGTTGCGGCAAGACGCAGCTCTGCCTCCAACTCGCCCTCTCCGCCCAGCTCCCCCCCTCTCACGGCGGTCTCTCCGCCTCCTCCATCTTCATCCACACCGAGTTCCCCTTCCCCTTCCGCCGCCTCCGCCACCTCTCACGCGCCTTCCGCGCCTCCCACCCCGACCTCCCTTGCTCCGACCCCTGCGACCGCGTCTTCCTACGCGCCGTCCACTCCGCGCACGAATTACTCAACCTAATCCCAACCATCGAGACTTTCCTCTTGCACTCGAAATCGCCGTGGCGGCCGGTGAGAATCATCGTGATCGATTCCATCGCCGCGCTTTTCCGCTCCGATTTCGAGAACACCGGATCGGATCTCCGGCGGAGGTCGTCGCTGTTTTTCGGAATCTCGGGGGGATTGCGGCAGTTGGCGAAGAGGTTTGGGATTGCGGTGGTGGTGACGAACCAGGTTGTGGATTTGATCGGTGATGGTGACGTGAGCTTTGGGAGTTTGGGTAATGGGCTTTATTCTTCGGGCCGAAGGGTTTGTCCTGCGTTGGGCCTGGCTTGGGCCCATTGTGTTAACTCGAGACTGTTTTTGTCGAAGGATGAGGATGAGCCGCCGGTGAAGACAAGGAAAATGAGAGTTGTGTTTGCTCCTCATTTGCCGCACTCTTCTTGCGAGTATGTTATTAAAGGGGAAGGCGTTTTCGGCGTGGAGATGATGCAACACCGAGAAGAAGAGATAAATCTTTGA
>Glyma18g52510.1 sequence type=predicted peptide gene model=Glyma18g52510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRAENLLQLQHRTQKCTLGCPVLDRCLAGGVPCASVTEFVGESGCGKTQLCLQLALSAQLPPSHGGLSASSIFIHTEFPFPFRRLRHLSRAFRASHPDLPCSDPCDRVFLRAVHSAHELLNLIPTIETFLLHSKSPWRPVRIIVIDSIAALFRSDFENTGSDLRRRSSLFFGISGGLRQLAKRFGIAVVVTNQVVDLIGDGDVSFGSLGNGLYSSGRRVCPALGLAWAHCVNSRLFLSKDEDEPPVKTRKMRVVFAPHLPHSSCEYVIKGEGVFGVEMMQHREEEINL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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