Report for Sequence Feature Glyma18g52500
Feature Type: gene_model
Chromosome: Gm18
Start: 61089502
stop: 61092712
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g52500
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G39620 AT
Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein | chr2:16518968-16521478 REVERSE LENGTH=836
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_G7J1P8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7J1P8_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233F553 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233F553 related cluster n=1 Tax=unknown RepID=UPI000233F553
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g52500
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma18g52500 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g288100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g52500
Coding sequences of Glyma18g52500
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g52500.1 sequence type=CDS gene model=Glyma18g52500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACAATGAGGTTGAGAATAAGAACCATAACAGCGAGACATTCACTTCACAACATTCACAATAATAGATACGACCACTCTCACTATGTTCATTCCGATGCCAGGGCAATTTCTCGAACCACCAACACAATTCCACACCATTGCAACCACAACCACCACTACTACCTTCACCTTCTTCGTTCATGCAAATACTTGAACCCTCTGCTCCAAATCCATGCTCGTCTAATTGTCCAACAATGCACCTTGGCACCCAATTCCATCACAAACCCTTCTCTGATTCTGTGGAACTCATTGATTAGAGCTTATTCTAGACTCCATCTATTCCAGGAAGCAATAAAATCGTATCAAACAATGTCATACATGGGACTTGAACCTGACAAGTACACATTCACCTTTGTTTTGAAGGCTTGTACTGGTGCTTTGGACTTCCATGAGGGTGTTGCCATTCATCAAGATATAGCTTCCAGGGAGTTAGAATGTGATGTTTTTATTGGGACTGGACTTGTTGACATGTACTGTAAGATGGGCCACTTGGACAATGCAAGAAAGGTATTTGATAAAATGCCCGGGAAGGATGTTGCTTCTTGGAATGCAATGATTTCAGGCTTATCTCAGAGCTCAAACCCTTGTGAGGCACTGGAAATATTTCAGAGGATGCAGATGGAGGAAGGTGTGGAGCCGGACTCTTTGGCTCATCAGATTTTTGACCAGATGTGGGTTAAGGATGATATCTCGTGGGCAACAATGATGGCTGGATATGTACATCATGGTTGTTACTTTGAGGTTCTTCAATTACTAGATGAAATGAAACGAAAGCACATAAAGATGAATAAGATATCAGTTGTAAACTCCGTTTTGGCAGCTACAGAGACGAGAGACCTGGAGAAAGGGAAGGAAGTTCATAATTATGCTTTACAGCTAGGGATGACGTCAGATATTGTAGTTGCTACTCCTATCGTGAGCATGTATGCAAAATGTGGTGAGTTGAAGAAAGCTAAAGAGTTTTTTCTGAGTCTTGAAGGAAGAGATTTGGTTGTTTGGTCTGCTTTTTTATCAGCTCTTGTCCAAGCAGGATATCCTGGAGAAGCATTGTCTATATTCCAAGAGATGCAGCATGAAGGTTTGAAACCAGATAAAACAATTCTATCAAGTCTGGTTTCCGCATGTGCTGAAATTTCAAGTTCCAGATTAGGTAAGATGATGCACTGCTATGTTATTAAAGCAGACATGGGGTCAGATATTTCAGTAGCAACAACCCTTGTCTCAATGTACACTAGATGTAAATCATTTATGTATGCTATGACGCTATTCAACAGAATGCATTATAAAGATGTTGTGGCATGGAATACTTTGATAAATGGATTTACCAAATGTGGTGACCCACGTCTTGCATTGGAAATGTTCCTTAGATTACAATTAAGTGGGGTTCAACCAGATAGTGGAACCATGGTGAGTTTGCTTTCAGCTTGTGCCCTTCTGGATGACCTTTATCTAGGAATCTGCTTTCATGGAAATATCATAAAGAATGGTATTGAATCTGAAATGCATGTAAAAGTTGCTCTAATAGACATGTATGCCAAATGTGGGAGCCTTTGCACAGCTGAAAACTTGTTTCACTTAAACAAGCATGTAAAGGATGAGGTATCTTGGAATGTAATGATTGCAGGGTACCTGCATAATGGATGTGCCAATGAAGCAATTTCCACATTTAATCAGATGAAATTGGAAAGTGTAAGGCCCAATTTAGTCACATTTGTGACCATTCTTCCGGCTGTATCATATTTATCAATATTAAGAGAGGCCATGGCTTTTCATGCCTGCATAATCCGAATGGGATTCATATCTAGTACCCTTATTGGAAACAGTCTTATAGATATGTATGCTAAAAGTGGGCAACTCAGTTATTCTGAGAAATGCTTTCATGAGATGGAAAATAAAGGCACTATCTCATGGAATGCAATGCTTTCAGGTTATGCTATGCATGGCCAAGGTGAAGTTGCCCTTGCCCTTTTTTCACTTATGCAAGAGACTCATGTCCCTGTTGATTCAGTTTCCTACATCAGTGTATTATCTGCCTGCAGACATGCTGGCTTAATTCAAGAAGGAAGGAACATTTTCCAGTCTATGACCGAAAAGCACAATCTTGAACCAAGTATGGAACACTATGCCTGCATGGTTGATCTTTTAGGCTGTGCTGGTTTATTTGATGAAGTTTTGTGTTTAATTGATAAAATGCCAACAGAACCTGATGCTCAAGTCTGGGGAGCCCTGCTGGGAGCATGTAAAATGCATTCCAATGTGAAATTAGGAGAGATTGCCCTCCATCACCTCCTCAAACTTGAACCAAGAAATGCAGTTCATTACATAGTTTTGTCAGACATATATGCTCAATGTGGTAGGTGGATTGATGCCAGGAGGACAAGATCAAATATGACCGACCATGGATTGAAGAAAAATCCCGGATATAGTTGGGTTGGAGCTCATAAACAAGGACTATCCCTTTCTGGCAAATGA
Predicted protein sequences of Glyma18g52500
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g52500.1 sequence type=predicted peptide gene model=Glyma18g52500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTMRLRIRTITARHSLHNIHNNRYDHSHYVHSDARAISRTTNTIPHHCNHNHHYYLHLLRSCKYLNPLLQIHARLIVQQCTLAPNSITNPSLILWNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACTGALDFHEGVAIHQDIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLSQSSNPCEALEIFQRMQMEEGVEPDSLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNKISVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKKAKEFFLSLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAEISSSRLGKMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFNRMHYKDVVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDLYLGICFHGNIIKNGIESEMHVKVALIDMYAKCGSLCTAENLFHLNKHVKDEVSWNVMIAGYLHNGCANEAISTFNQMKLESVRPNLVTFVTILPAVSYLSILREAMAFHACIIRMGFISSTLIGNSLIDMYAKSGQLSYSEKCFHEMENKGTISWNAMLSGYAMHGQGEVALALFSLMQETHVPVDSVSYISVLSACRHAGLIQEGRNIFQSMTEKHNLEPSMEHYACMVDLLGCAGLFDEVLCLIDKMPTEPDAQVWGALLGACKMHSNVKLGEIALHHLLKLEPRNAVHYIVLSDIYAQCGRWIDARRTRSNMTDHGLKKNPGYSWVGAHKQGLSLSGK*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
