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Report for Sequence Feature Glyma18g52491

Feature Type:gene_model
Chromosome:Gm18
Start:61085494
stop:61089036
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g52491
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G35550AT Annotation by Michelle Graham. TAIR10: WUSCHEL related homeobox 13 | chr4:16875814-16877167 REVERSE LENGTH=268 SoyBaseE_val: 7.00E-78ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
KOG0484 KOG Transcription factor PHOX2/ARIX, contains HOX domain JGI ISS
PTHR24329Panther FAMILY NOT NAMED JGI ISS
PTHR24329:SF295Panther JGI ISS
PF00046PFAM Homeobox domain JGI ISS
UniRef100_Q9ZRZ4UniRef Annotation by Michelle Graham. Most informative UniRef hit: HB2 homeodomain protein (Fragment) n=2 Tax=Populus RepID=Q9ZRZ4_9ROSI SoyBaseE_val: 7.00E-92ISS
UniRef100_UPI000233F132UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F132 related cluster n=1 Tax=unknown RepID=UPI000233F132 SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g52491
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g52491 not represented in the dataset
Glyma18g52491 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g52491
ParalogEvidenceComments
Glyma02g10410 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g52491 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g288000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g52491
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma18g52491
>Glyma18g52491.2   sequence type=transcript   gene model=Glyma18g52491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTTTTCCAAAATATATTTTCTTGATTCCAAAAGAACCTAGGAATGTTCCGGAAATAAAAAGCCCAGCTAGGAACATGTATTTTGTTTCGGACAAGAATATCCCTCAAGACATTGGAATAAGACAAACCCTATCCTTGGTCTGTTCCTTCATTCTTATTGTCTCCCCGCATCGTACGCCGCCGACACAGCTTCGAATCGCTGCCAAGTGCTAACAAACGCCTCTGAGTCTCTGACACCAACGCAACTCTCTCTGCTCACATTTTTGAAGGAGATGGTGAACGTGATGGAGTGGCAGAAGCAGCGTTGGCAACCGAATGGGAACGCGGAAATGATGTACGTGAAAGTGATGACCGACGAACAGCTCGAGACTCTGCGCAAACAGATTGCAGTTTACGCAACCATCTGTGAACAACTCATCGAAATGCACAAAAACATCTCCTCGCACCAAGATCTTGCAGGGATTAGGCTGGGGAATATGTATTGTGATCCATTGTTGGGGTCTGGTGGGCACAAAATAGCTTCAAGGCAGCGGTGGACTCCGTCCGCTATGCAGCTTCAGATTCTTGAGCGAATATTTGATCAAGGGACTGGAACCCCCACCAAGGAAAAGATCAAGGAGATCACTAATGAGCTCAGCCAGCATGGCCAGATTTCTGAGACCAATGTGTATAATTGGTTCCAGAACAGGCGTGCTCGCTCCAAAAGAAAGCAGCAGAATGTGGCACCTAGTGCTAATGCTGAATCGGAAGTGGAGACTGAGGTTGATTCTAAGGATAAGAAGACAAAGCCGGACGAATTTCAGTCCCCTCCTAGCGTTTCTGCTGTGCCTGCTGATGATAATTTAGGCTTCCAGAACCATGGCAGTTTGCAGTACTTGAATCCAGAGTCCAACAAACCAGATTCTGTGTTCCCATCTGATGCAAGTTTAAGATCTACAAGAAATTTCAATCATGTGCCTGTTTTTGATGGGCTGCTATCGAACTCAACGAGTGACTATCTTACTGGAAAAATGGAAGCACCTGAGAACTACGACTTATACCAGCCAGCAGGCGACTTCAACATGGCAGGTTGACGTCCAATGTAATTTCTGAAGACTGTGATTAGCTGTAAAGAATTGCTGGTGTGGTTTTGGGCTTGTGTTGATGTGAAAAGTTGAACCAATTGAAGCATGAAACTTATAGTTTATAGTATATAGATAAAATGATCTTTTATAATGGTAGGCGGACATTTTACTTGATAATTGAATATAATTATGAGTTAATATTGATATTGTGAAGTTGGATTTTTTCAAGAATGGTGTACCGTAAGCGTCTTTTACCATTGGCTTGGCTTTGGTATTTGGTTGAAAGAGACATGGTAAGAATATATTTTCTGTGGCTGGGGCTTCTAAAATTTGAGTGGAAATAGGATTAGAGA
Coding sequences of Glyma18g52491
>Glyma18g52491.1   sequence type=CDS   gene model=Glyma18g52491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAACGTGATGGAGTGGCAGAAGCAGCGTTGGCAACCGAATGGGAACGCGGAAATGATGTACGTGAAAGTGATGACCGACGAACAGCTCGAGACTCTGCGCAAACAGATTGCAGTTTACGCAACCATCTGTGAACAACTCATCGAAATGCACAAAAACATCTCCTCGCACCAAGATCTTGCAGGGATTAGGCTGGGGAATATGTATTGTGATCCATTGTTGGGGTCTGGTGGGCACAAAATAGCTTCAAGGCAGCGGTGGACTCCGTCCGCTATGCAGCTTCAGATTCTTGAGCGAATATTTGATCAAGGGACTGGAACCCCCACCAAGGAAAAGATCAAGGAGATCACTAATGAGCTCAGCCAGCATGGCCAGATTTCTGAGACCAATGTGTATAATTGGTTCCAGAACAGGCGTGCTCGCTCCAAAAGAAAGCAGCAGAATGTGGCACCTAGTGCTAATGCTGAATCGGAAGTGGAGACTGAGGTTGATTCTAAGGATAAGAAGACAAAGCCGGACGAATTTCAGTCCCCTCCTAGCGTTTCTGCTGTGCCTGCTGATGATAATTTAGGCTTCCAGAACCATGGCAGTTTGCAGTACTTGAATCCAGAGTCCAACAAACCAGATTCTGTGTTCCCATCTGATGCAAGTTTAAGATCTACAAGAAATTTCAATCATGTGCCTGTTTTTGATGGGCTGCTATCGAACTCAACGAGTGACTATCTTACTGGAAAAATGGAAGCACCTGAGAACTACGACTTATACCAGCCAGCAGGCGACTTCAACATGGCAGGTTGA

>Glyma18g52491.2   sequence type=CDS   gene model=Glyma18g52491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAACGTGATGGAGTGGCAGAAGCAGCGTTGGCAACCGAATGGGAACGCGGAAATGATGTACGTGAAAGTGATGACCGACGAACAGCTCGAGACTCTGCGCAAACAGATTGCAGTTTACGCAACCATCTGTGAACAACTCATCGAAATGCACAAAAACATCTCCTCGCACCAAGATCTTGCAGGGATTAGGCTGGGGAATATGTATTGTGATCCATTGTTGGGGTCTGGTGGGCACAAAATAGCTTCAAGGCAGCGGTGGACTCCGTCCGCTATGCAGCTTCAGATTCTTGAGCGAATATTTGATCAAGGGACTGGAACCCCCACCAAGGAAAAGATCAAGGAGATCACTAATGAGCTCAGCCAGCATGGCCAGATTTCTGAGACCAATGTGTATAATTGGTTCCAGAACAGGCGTGCTCGCTCCAAAAGAAAGCAGCAGAATGTGGCACCTAGTGCTAATGCTGAATCGGAAGTGGAGACTGAGGTTGATTCTAAGGATAAGAAGACAAAGCCGGACGAATTTCAGTCCCCTCCTAGCGTTTCTGCTGTGCCTGCTGATGATAATTTAGGCTTCCAGAACCATGGCAGTTTGCAGTACTTGAATCCAGAGTCCAACAAACCAGATTCTGTGTTCCCATCTGATGCAAGTTTAAGATCTACAAGAAATTTCAATCATGTGCCTGTTTTTGATGGGCTGCTATCGAACTCAACGAGTGACTATCTTACTGGAAAAATGGAAGCACCTGAGAACTACGACTTATACCAGCCAGCAGGCGACTTCAACATGGCAGGTTGA
Predicted protein sequences of Glyma18g52491
>Glyma18g52491.1   sequence type=predicted peptide   gene model=Glyma18g52491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVNVMEWQKQRWQPNGNAEMMYVKVMTDEQLETLRKQIAVYATICEQLIEMHKNISSHQDLAGIRLGNMYCDPLLGSGGHKIASRQRWTPSAMQLQILERIFDQGTGTPTKEKIKEITNELSQHGQISETNVYNWFQNRRARSKRKQQNVAPSANAESEVETEVDSKDKKTKPDEFQSPPSVSAVPADDNLGFQNHGSLQYLNPESNKPDSVFPSDASLRSTRNFNHVPVFDGLLSNSTSDYLTGKMEAPENYDLYQPAGDFNMAG*

>Glyma18g52491.2   sequence type=predicted peptide   gene model=Glyma18g52491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVNVMEWQKQRWQPNGNAEMMYVKVMTDEQLETLRKQIAVYATICEQLIEMHKNISSHQDLAGIRLGNMYCDPLLGSGGHKIASRQRWTPSAMQLQILERIFDQGTGTPTKEKIKEITNELSQHGQISETNVYNWFQNRRARSKRKQQNVAPSANAESEVETEVDSKDKKTKPDEFQSPPSVSAVPADDNLGFQNHGSLQYLNPESNKPDSVFPSDASLRSTRNFNHVPVFDGLLSNSTSDYLTGKMEAPENYDLYQPAGDFNMAG*






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