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Report for Sequence Feature Glyma18g52480

Feature Type:gene_model
Chromosome:Gm18
Start:61075242
stop:61082432
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g52480
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G12580AT Annotation by Michelle Graham. TAIR10: heat shock protein 70 | chr3:3991487-3993689 REVERSE LENGTH=650 SoyBaseE_val: 0ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0009266GO-bp Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009615GO-bp Annotation by Michelle Graham. GO Biological Process: response to virus SoyBaseN/AISS
GO:0009617GO-bp Annotation by Michelle Graham. GO Biological Process: response to bacterium SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0034976GO-bp Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress SoyBaseN/AISS
GO:0042542GO-bp Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0031625GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin protein ligase binding SoyBaseN/AISS
KOG0100 KOG Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily JGI ISS
PTHR19375Panther HEAT SHOCK PROTEIN 70KDA JGI ISS
PTHR19375:SF1Panther HEAT SHOCK PROTEIN 70-RELATED JGI ISS
PF00012PFAM Hsp70 protein JGI ISS
UniRef100_G7KWU8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Heat shock protein n=1 Tax=Medicago truncatula RepID=G7KWU8_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233F131UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F131 related cluster n=1 Tax=unknown RepID=UPI000233F131 SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g52480
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g52480 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g287900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g52480
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g52480
>Glyma18g52480.1   sequence type=CDS   gene model=Glyma18g52480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACAAATGGCAAGACACCTGCGATAGGAATCGATTTGGGCACGACATACTCATGCGTTGCAGTGTGGCAGCGTGATCGAGTGGAGATCATCGCGAACGACCAAGGAAACAGAACAACACCCTCTTATGTTGCTTTCAATAACACCCAAAGGATGATTGGTGATGCTGCCAAGAACCAGGCTGCTACCAATCCAACCAACACTGTCTTTGACGCAAAGCGCCTAATTGGTAGGAGATTTAGTGATCAAGAGGTTCAAAGTGATATGGAGCTATGGCCATTCAAAGTCATTGCTGATGTTAATGGCAAACCAATGATTGCTGTTGATTACAATTGTGAGAAAAAGCAATTTTCTGCAGAAGAAATTTCATCCATGGTTTTGGCAAAGATGCTTGACATTGCAGAGTCTTTCCTTGGATCAACAGTGAAGAATGCTGTTATCACTGTGCCTGCTTACTTCAATGATTCTCAGCGACAAGCTACTAAAGATGCTGGTAAAATTGCTGGCCTCAATGTTTTGAGAATCCTCCATGAGCCAACTGCTGCTGCAATTGCATATCGGCTTGAAATGAAAAATTGTAATAATGATAGAAGGAACGTTTTTGTGTTTGATCTTGGTGGTGGTACTTTGGATGTGTCTCTTCTTGTTTTTGAGAAGGATCATATCCGAGTTAAGGCAACTACTGGAGACACTCACCTCGGAGGAGAGGACTTCGATAACAATATGGTGACTTACTGTGTGAAAGAGTTTAAGAGAAAGAATAAAATGGACATTAGTGGAAACAAAAGAGCCCTTAGGAGGTTGAGGACTGCTTGTGAGAAAGCAAAGAGGATACTCTCATGCTCTACAATGACCACCATTGAGGTAGACTCTTTGTATGATGGTATTGATTTCCACTCATCAATAAGTCGCGCAAAGTTTGAGGAACTCAACAAGGACTACCTTAACAAGTGTATTGAGTTTGTAGGGAAGTGTCTGATAGATGCTAAGATGGACAAGAGTAGTGTTCATGATGTTGTCCTCGCAGGTGGATCTACTAGGATTCCCAAATTGCAGCAACTATTAAGTGACTTCTTTGATGGGAAGGATCTCTGCAAATGCATCAATGCTGATGAGGCCGTTGCATATGGTGCTGCTGTCCATGCTTATATGCTTAATGGTGAGTCCAGTGAGAAGGTTCAAAACGCTTCACTTTGGGAAGTCACTCCTCTTTCCCTTGGGTTGCAAGAAGATGGAGGTATCATGAAAGTAATCATTCCTAGGAATACTAGCATTCCTACAAAGATGGAAGATGTACTCACAACACATTTTGATAACCAAACCAATATCTTGATTCATGTATACGAGGGTGAGAGGAAAAGAACTAGAGACAACAACTTGTTGGGTAAGTTTGTGCTAGAAATTCCTCCAGTTCCACGTGGTGTTCCTCAAATTAGCGTTTGCTTTGAACTTGATTATGATGGCATCCTACATGTTTCTGCCGAGGAAAAATCTAGGGGAATATCCAAGAAGCTGGCCATAACAAATGACAAAGGAAGGCTTTCGAAGAAAGAAATTGAAAGGATGATATCAGAAGCAGAGAAGTACAAAGCTGAAGATGAGATGTATAGGAACAAGGTACAATCAAGGCATGCATTGGAGAAGTACGCTTACAACATGAGGGATGCTATAAACATTAAGGAGATTAGCTTGAAGCTTTCTCCAGAAGACAAGAAAAATATCAATGATGCAATTGATTCTGCCTTAGAGTGGCTCGAGGTCAGCATGGATGCAAACCCAAATGATTTTGACAACATGCGGAGCACTCTTTCTAGCGTTTTTAATCCAGTTATTGTGAAGATGATAAAGGATGAGGATAATGTTGCGCCTCCAGATACTGTTGCTAGCTCTGGTAGCAATAGTGTGAAGAATGGCTTGTTATCAATATTGGCAAATTTTGCTCTCGATGCAGTGTATTCAGCTGCTACAGGTGATATCATTGGATTTGCTTCCGTGATTGTTGACTGTTTGTCAATTTAG
Predicted protein sequences of Glyma18g52480
>Glyma18g52480.1   sequence type=predicted peptide   gene model=Glyma18g52480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATNGKTPAIGIDLGTTYSCVAVWQRDRVEIIANDQGNRTTPSYVAFNNTQRMIGDAAKNQAATNPTNTVFDAKRLIGRRFSDQEVQSDMELWPFKVIADVNGKPMIAVDYNCEKKQFSAEEISSMVLAKMLDIAESFLGSTVKNAVITVPAYFNDSQRQATKDAGKIAGLNVLRILHEPTAAAIAYRLEMKNCNNDRRNVFVFDLGGGTLDVSLLVFEKDHIRVKATTGDTHLGGEDFDNNMVTYCVKEFKRKNKMDISGNKRALRRLRTACEKAKRILSCSTMTTIEVDSLYDGIDFHSSISRAKFEELNKDYLNKCIEFVGKCLIDAKMDKSSVHDVVLAGGSTRIPKLQQLLSDFFDGKDLCKCINADEAVAYGAAVHAYMLNGESSEKVQNASLWEVTPLSLGLQEDGGIMKVIIPRNTSIPTKMEDVLTTHFDNQTNILIHVYEGERKRTRDNNLLGKFVLEIPPVPRGVPQISVCFELDYDGILHVSAEEKSRGISKKLAITNDKGRLSKKEIERMISEAEKYKAEDEMYRNKVQSRHALEKYAYNMRDAINIKEISLKLSPEDKKNINDAIDSALEWLEVSMDANPNDFDNMRSTLSSVFNPVIVKMIKDEDNVAPPDTVASSGSNSVKNGLLSILANFALDAVYSAATGDIIGFASVIVDCLSI*






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