Glyma18g52440 - SoyBase

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Report for Sequence Feature Glyma18g52440

Feature Type:	gene_model
Chromosome:	Gm18
Start:	61048735
stop:	61050918
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g52440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G12770	AT	Annotation by Michelle Graham. TAIR10: mitochondrial editing factor 22 \| chr3:4057027-4059193 REVERSE LENGTH=694	SoyBase	E_val: 0	ISS
GO:0080156	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrial mRNA modification	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF145	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_Q2HUK9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=Q2HUK9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F551	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F551 related cluster n=1 Tax=unknown RepID=UPI000233F551	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g52440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g52440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g287500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g52440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g52440

Limit To All Plant Sequences

>Glyma18g52440.1   sequence type=CDS   gene model=Glyma18g52440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCGAAACTCCTCAGCATATCTCCCCTTGCAACCAAAAACCAAAAGGTTACAACTCCTCAAATACCCAGATGCTTTGTCCTCAAGTTTGTCAAATATCTTTGTTTTTCATCAGCTCTTCACCCTGAACACTTTGTTAACCATGACCATTGCTTCAATTCAGACTCATTCTATGCATCTCTTATTGATAATTCTACCCACAAGAGACACCTTGATCAAATACATAACCGGTTAGTTATCTCCGGGCTGCAACATAATGGGTTTCTCATGACCAAACTGGTTAATGGGAGTTCAAATCTTGGACAAATTTGTTATGCTCGCAAGCTGTTTGATGAATTTTGTTACCCTGACGTGTTTATGTGGAATGCTATCATTAGGAGTTATTCGAGGAACAATATGTACAGGGACACCGTTGAAATGTATAGATGGATGAGATGGACAGGAGTGCATCCAGATGGATTCACTTTTCCTTATGTACTAAAAGCTTGTACTGAGTTGTTAGATTTTGGTTTGAGTTGCATAATTCATGGGCAGATAATCAAATATGGCTTTGGGTCAGATGTGTTTGTGCAGAATGGCCTTGTTGCATTGTATGCTAAATGTGGCCATATTGGTGTGGCAAAAGTGGTGTTTGATGGGTTATACCATAGAACAATTGTTTCATGGACTTCCATCATTTCTGGATATGCACAGAATGGGAAAGCTGTGGAAGCATTGAGAATGTTCAGTCAAATGAGAAATAATGGTGTGAAACCAGATTGGATTGCTCTGGTAAGCATTCTGAGGGCGTATACTGATGTAGATGACTTAGAGCAAGGGAGATCTATTCATGGCTTTGTCATCAAAATGGGTCTTGAAGATGAGCCTGCTTTGCTTATCTCTCTTACAGCTTTTTATGCTAAATGTGGGCTGGTGACAGTTGCAAAATCTTTCTTTGATCAAATGAAGACAACAAACGTGATTATGTGGAATGCAATGATATCTGGCTATGCAAAGAATGGCCATGCTGAGGAAGCAGTAAATCTATTCCATTACATGATCTCGAGAAATATTAAACCAGATTCTGTCACTGTGAGGTCTGCAGTCTTAGCTAGTGCGCAAGTTGGTTCCCTCGAATTAGCACAATGGATGGATGACTATGTTAGCAAGAGTAACTATGGAAGTGACATTTTTGTTAATACTTCTCTCATTGATATGTATGCAAAATGTGGAAGTGTGGAATTTGCTCGAAGGGTATTTGATCGTAATTCTGATAAGGATGTTGTTATGTGGAGTGCCATGATTATGGGATATGGATTGCATGGTCAAGGATGGGAAGCCATTAATCTTTACCATGTGATGAAGCAAGCAGGGGTGTTCCCAAATGATGTCACCTTTATTGGGCTTCTCACAGCATGCAATCATTCTGGCCTTGTAAAAGAGGGATGGGAGCTATTCCATTGCATGAAAGACTTTGAAATTGTGCCTCGTAATGAGCATTATTCTTGTGTTGTAGATCTCTTGGGACGAGCAGGTTATTTGGGTGAGGCTTGTGCATTTATAATGAAAATTCCCATTGAACCTGGTGTAAGTGTATGGGGGGCACTTTTAAGTGCATGCAAGATCTATCGCTGTGTAACATTGGGAGAATATGCTGCAAACAAGCTATTCTCATTGGATCCATACAATACAGGGCATTATGTACAACTCTCTAATCTCTATGCTTCCTCCTGCTTGTGGGATTGTGTTGCACATGTTCGAGTTCTAATGAGGGAGAAAGGATTGAATAAGGACCTTGGTTACAGTGTAATTGAAATAAATGGGAAGCTACAGGCATTTCATGTAGGGGACAAGTCACACCCAATGGCTAAGGAAATATTCGATGAGCTTCAGAGATTAGAAAGAAGGTTAAAGGAGGTTGGGTTTGTCCCATATACAGAATCTGTTTTGCATGATCTGAATTATGAAGAGAAGGAGGAGAATCTTAGTTTTCATAGTGAGAGGATAGCTGTTGCTTATGGTCTTATTAGTACTGCTCCTGGAACTACACTTAGAATAACAAAGAATCTTCGAGCATGTGTGAACTGTCATTCTGCCATAAAGCTTATATCAAAGCTTGTTGAGAGGGAAATAATTGTAAGGGATGCAAATCGGTTTCATCATTTTAAAGATGGTTTGTGTTCATGTGGAGACTATTGGTAA

Predicted protein sequences of Glyma18g52440

Limit To All Plant Sequences

>Glyma18g52440.1   sequence type=predicted peptide   gene model=Glyma18g52440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASKLLSISPLATKNQKVTTPQIPRCFVLKFVKYLCFSSALHPEHFVNHDHCFNSDSFYASLIDNSTHKRHLDQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCMKDFEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIEINGKLQAFHVGDKSHPMAKEIFDELQRLERRLKEVGFVPYTESVLHDLNYEEKEENLSFHSERIAVAYGLISTAPGTTLRITKNLRACVNCHSAIKLISKLVEREIIVRDANRFHHFKDGLCSCGDYW*

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