Glyma18g52420 - SoyBase

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Report for Sequence Feature Glyma18g52420

Feature Type:	gene_model
Chromosome:	Gm18
Start:	61032458
stop:	61037674
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g52420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13660	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59830.2); Has 135 Blast hits to 126 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr5:4405094-4406983 FORWARD LENGTH=536	SoyBase	E_val: 2.00E-110	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_B9SR49	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SR49_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F12F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F12F related cluster n=1 Tax=unknown RepID=UPI000233F12F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g52420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g52420

Paralog	Evidence	Comments
Glyma02g10480	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g52420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g287300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g52420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g52420

Limit To All Plant Sequences

>Glyma18g52420.1   sequence type=CDS   gene model=Glyma18g52420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTATCAGCATAAAAGCTTTTGGATGCCACGGGATGCTGGCTGCATGGCTGAAGAAAATGCGGGATATGAAAATTCTTCCAGAATTGAACCCAAGCGCAGTCATCAGTGGTTTATGGATACAGGTGAACCTGAAATATTCAGCAACAAGAAACAAGCAGTTGAAGCTGTTAGTGGCAGGCCAATTTCTGGAGTTTCACATGCAAATGTTTCCCAATGGGACACCAATTCAGGATTTCACTCAGTCACAAGTCAATTTTCTGACCGTCTTTTTGGATCTGATCTTGCTAGGACTGTGAATTTGGTTGATAAGAATGTGCCATCTATTGTAAGTGGAAATCTGAACATGGGAAGGAAAGATTTTGAGCATCAATATGGTAATGATCCTTCTGTGGGATTGTCAATATCCCATTCCATAGCAGACCCTTCATCATGTCTCAATTTTGGTGGCATCAGAAAAGTTAAAGTTAATCAAGTCAGAGATTCTGACAACTGCATGCCTGCTGCATCCATGGGGCCCTCCTATAGTAGGGAAGATAATAGTACAATTTCAGTAGGTGCTGGCTACAATAAGAATGATGGCGACAATATTTCATTGGGTCCTACTTATAACAATGGATATGACAACACCATTGCTATGGGGAGCAGAATTAGTAAGACTGATGACAATCTTCTTTCAATGGCTCACACCTTCAGTAAAGGGGATGGGGGTTTTATGTTGATGGGCCACAATTATGGCAAGGGAGATGAAAGTATCGTATCAATGGGTCAGCCCTTTGACAAGGGAGATGGAAATTTCATATCAATGGGTCAATCATATGAGAAGGAAGATGGCAATTTAATATCTCTGGGCACCTCATATACCAAGGTACATGAAAGCTTTATACCAGTTGGTCCAACCTATGGTAAATCAGGAGAAAATTTCATAACTGTTGCTCCTTATGACAAGGGTACTAATCATATAATATCAATGGGTCCAACATATGATAAGGTGGATTCAAATATTGCATCAACAGTTCCATCATATGACAGAGGAGATTCTAGTTCCTTACCTGTGGGTCAAAACCACCATAAGGGTCAGAGCAGTTCCATTTCTTTTGGAGGTTTTCATGATGACCCTGAACCAAATACCCCTGGTGGAATCATTAGTGGCTATGATCTGTTGATAGGAGGCCAGAACTCAGCTCAAGGATTGGATAGCCAGAACGACCTGACTGAGACAAACACTGAATCACTTGTAAATAGCATTCCAAAACCCAATACTAAAAATGATATTGTTGTTAAGAACAAAGAGCCAAAGACAACCAAGAAGGCTCCTACTAACAACTTCCCTTCAAATGTCAAAAGTTTGCTTTCAACTGGTATTTTTGATGGTGTTCAGGTGAAATATGTTTCGTGGTCACGGGAGAAAAGTCTTAAGGGAATAATAAAAGGAACTGGGTATTTGTGTTCATGTGACAACTGCAACCAGTCAAAGGCTCTTAATGCTTACGAGTTTGAGCGTCATGCTGGTGCTAAGACAAAACATCCTAACAATCACATATACTTTGAGAATGGAAAAACCATCTATGCTGTTGTTCAAGAGCTGAAAAATACTAATCAGGATATGCTTTTTGATGCTATTCAAAATGTGACTGGCTCTACCATCAACCAAAAGAACTTTCGAATATGGAAAGCATCATACCAAGCTGCTACTCGGGAGCTTCAGCGTATCTATGGAAAGGATGAAGTGGTCATTCCTTCATGA

Predicted protein sequences of Glyma18g52420

Limit To All Plant Sequences

>Glyma18g52420.1   sequence type=predicted peptide   gene model=Glyma18g52420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSYQHKSFWMPRDAGCMAEENAGYENSSRIEPKRSHQWFMDTGEPEIFSNKKQAVEAVSGRPISGVSHANVSQWDTNSGFHSVTSQFSDRLFGSDLARTVNLVDKNVPSIVSGNLNMGRKDFEHQYGNDPSVGLSISHSIADPSSCLNFGGIRKVKVNQVRDSDNCMPAASMGPSYSREDNSTISVGAGYNKNDGDNISLGPTYNNGYDNTIAMGSRISKTDDNLLSMAHTFSKGDGGFMLMGHNYGKGDESIVSMGQPFDKGDGNFISMGQSYEKEDGNLISLGTSYTKVHESFIPVGPTYGKSGENFITVAPYDKGTNHIISMGPTYDKVDSNIASTVPSYDRGDSSSLPVGQNHHKGQSSSISFGGFHDDPEPNTPGGIISGYDLLIGGQNSAQGLDSQNDLTETNTESLVNSIPKPNTKNDIVVKNKEPKTTKKAPTNNFPSNVKSLLSTGIFDGVQVKYVSWSREKSLKGIIKGTGYLCSCDNCNQSKALNAYEFERHAGAKTKHPNNHIYFENGKTIYAVVQELKNTNQDMLFDAIQNVTGSTINQKNFRIWKASYQAATRELQRIYGKDEVVIPS*

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