Glyma18g52390 - SoyBase

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Report for Sequence Feature Glyma18g52390

Feature Type:	gene_model
Chromosome:	Gm18
Start:	61004999
stop:	61008182
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g52390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G46530	AT	Annotation by Michelle Graham. TAIR10: NB-ARC domain-containing disease resistance protein \| chr3:17130739-17133246 REVERSE LENGTH=835	SoyBase	E_val: 3.00E-88	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0009626	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0009814	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0043531	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ADP binding	SoyBase	N/A	ISS
KOG4658	KOG	Apoptotic ATPase	JGI		ISS
PTHR11017	Panther	LEUCINE RICH REPEAT PROTEIN	JGI		ISS
PTHR11017:SF126	Panther	OS11G0237600 PROTEIN	JGI		ISS
PF00931	PFAM	NB-ARC domain	JGI		ISS
UniRef100_C6F190	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NBS-LRR disease-resistance protein scn3r1 n=1 Tax=Glycine max RepID=C6F190_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1N532	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N532_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g52390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g52390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g287000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g52390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g52390

Limit To All Plant Sequences

>Glyma18g52390.2   sequence type=CDS   gene model=Glyma18g52390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGATGCAATTGTGAACTTCTTGGCAGAGAAGTTGACGAGGCTGCTTGAGGAGGAAGCCAAGCTTCTCACCGAGGTGCATGACAACGTGACCTCGTTGCACGACGAGCTTAAGATATTGAACCTCTTCCTCAAAGAGACCCAAGGGACCAAGCAGAGAGAGCACGGACTGGTGGCGGAAATGGTCGGCCAAATCAGAGACGCTGCATACCAAGCCGAAGACATCATCGACACCTATGTGGCGGACATGATTCGACGTCGAAAGATGAACCGGTTGGAGAAGGTGGTCATCGGCAGTGTCAATCACGCGCTCATGCTTCACAAAGTGGCCGTCAAGATAGGCGACATCAAGACAAGAATCGACAATAGGTTCGGCAACATAGAAAAATACGGCGTCAGACTCATCAGTGCAAAAGGTGAAAAAAGTAACGGAGAAGAAGAAGAAACAGAGCGCGTGAGGAAACAGAGGAGCGAGGTGGAGGAAGATAAAGTGGCGGGGTTCGAGAGTTACTCCAGGGCTGTTATAGAAAAACTCACGGCAAGGGTCAGGGACAGGGATTCACGCCTTAACGTTGTTTCCATCACCGGTGTTGGTGGCTTGGGGAAAACCACCCTTGCCAGAAAAACATACAACAACGTTAGGGTCAAGGACACGTTTTCTTGTCGTGCATGGGGTTATGTTTCAAATGATTATCGGCCCAGGGAATTCTTCTTGAGTCTTCTAAAGTGTTTGCAACCCGGGGAATATAGTGATATGTCCGAGAGAAGGGAGAGCGACGAAGAACTGAAGATGAAGGTGCGAGAATGCTTGAATAAAAGCGGAAAGTACTTGGTGGTGGTGGACGATGTTTGGGAAACCCAAGTGTGGGATGAGATTAAAAGCGCTTTTCCAGATGCCAACAACGGAAGCAGAATATTGATAACAAGTCGTTCGACAAAGGTGGCTTCTTATGCTGGAACAACCCCTCCCTACTCGCTTCCCTTCCTCAACAAACAAAAAAGTTGGGAGCTACTTTTCAAGAAGTTGTTTAAGGGACGAAGAAAGTGTCCCCCAGAATTAGTGGAACTGGGAAAATCCATAGCCGAAAGATGTGATGGCTTGCCACTTGCCATCATCTTCATGGCGGGGATTCTGGCCAACAAGGAATTGCACAAGGAGTGGTCTGATATCAAGGACCATATGGATTGGCATCTTGGTAGTGACAATGACAACATACTAATGGATATACTGAGACTAAGCTACGACACCTTGCCTTCACGGTTGAAGCCTTGCTTTCTATATTTTGGCATGTTCCCTCAGGGATACAATATCCCCGTCAAGCAATTGATCCGCTTGTGGACATCTGAAGGACTATTAACAACACATGATTCTTCTTCCGGAAGCAGGACCAACGCACCGGAGCCCGAATACATTGCGGAACAGTACTTGGCTGAACTAGTGGAACGAAGCTTGGTCCAAGTCATACATAGGACCAGCTATGGCAGTGCCAAGACATGTCGTGTTCATCTCGTTCTCCGCCACTTCTGCATATCCGAGGCCCGGAAGGACAAGTTTTTCCAAGTTGGTGGAATTATTAATGATTCTTCTCAAATGCACAGTCGTAGGTTGTCCCTCCAAGGCACACTATTTCACAAGTCCTCTGTTTCAAGCACTTCATTATCTAATAATTCCTCTGTCTCCGGAACTCGTTCCCTCTTATGCTTCGGCAAAGAAGAGGTGTCCGACGTTAAGAAAGACCAATGGGAATGGCTTTTCAAGAGTTTCAAGTTGGCTCGGGTGTTGGATCTAGGACAAATGAATGTTACCTCACTACCTAGTGGTTTGAAGAAGCTCATCCACTTAAGGTACTTGAGTATACACTCACACAATCTCGAAACTATTCCGGATTCAATATGCAACCTATGGAATCTAGAAACGCTTGATCTAAGGGGTTCCCCTATAAAATCCTTCTCTGCCGAACTCTGGCAGCTTAAGCATCTGAGAAATCTTCTGTTGCTTGGACCCGTGGTGCTTCCGGAAAGTGAAACCATGCCGAATCTCCAAACTCTCTCTACGGTGGCACTTGATCCACGCACGGCATCGTTGTTGGAGAATGGTAGATTCCCCGAGTTGAAAAAACTGGGTTTACATTATGAAAAACGTGATGACACAATGTATGAGTGTGATCCTCGTGTGCTGTTACAAAGTTGCCTCCACCGGCTAAGCTATCTCCGGAAGCTAAAACTTATTGGCACTACTGAGATCCCGCAAAATGCAGCAAATGTGTGTGTGTTTCCCTCAACCATCACCAAGATAACCCTAACAAAGTTTGGTTTCTTCAACTCTAGTGCCATGAACACACTAGGAAAGCTTCCAAACCTCTTGGTGCTGAAATTGTCATCGCAGAAAAGTGATGCTAGTTTTGACCTGCATTGTGCCGCGGGAGGGTTCTCAAAGCTTCAAGTGTTTGTGATGGTAGAGATCATGGTTAAAAGCTGGAGAGTAGTGAAAGGTTCGATGCCAAGTGTTCAACGTGTAGTCGTCAGAAACTGCGAATACTTAACTGAGCTTCCAGAAGAAATCTGGTCCTTGACTGCATTGTGCCAAGTGAATGTTTCTTGTCCCAGTAGAAAATTGGCAAAAACACTGCAAAATTTGGAGGTGAAGAATAAGCGTAAGCTCGTCGTCTATCCTCGCTCAACCAATTGA

Predicted protein sequences of Glyma18g52390

Limit To All Plant Sequences

>Glyma18g52390.2   sequence type=predicted peptide   gene model=Glyma18g52390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADAIVNFLAEKLTRLLEEEAKLLTEVHDNVTSLHDELKILNLFLKETQGTKQREHGLVAEMVGQIRDAAYQAEDIIDTYVADMIRRRKMNRLEKVVIGSVNHALMLHKVAVKIGDIKTRIDNRFGNIEKYGVRLISAKGEKSNGEEEETERVRKQRSEVEEDKVAGFESYSRAVIEKLTARVRDRDSRLNVVSITGVGGLGKTTLARKTYNNVRVKDTFSCRAWGYVSNDYRPREFFLSLLKCLQPGEYSDMSERRESDEELKMKVRECLNKSGKYLVVVDDVWETQVWDEIKSAFPDANNGSRILITSRSTKVASYAGTTPPYSLPFLNKQKSWELLFKKLFKGRRKCPPELVELGKSIAERCDGLPLAIIFMAGILANKELHKEWSDIKDHMDWHLGSDNDNILMDILRLSYDTLPSRLKPCFLYFGMFPQGYNIPVKQLIRLWTSEGLLTTHDSSSGSRTNAPEPEYIAEQYLAELVERSLVQVIHRTSYGSAKTCRVHLVLRHFCISEARKDKFFQVGGIINDSSQMHSRRLSLQGTLFHKSSVSSTSLSNNSSVSGTRSLLCFGKEEVSDVKKDQWEWLFKSFKLARVLDLGQMNVTSLPSGLKKLIHLRYLSIHSHNLETIPDSICNLWNLETLDLRGSPIKSFSAELWQLKHLRNLLLLGPVVLPESETMPNLQTLSTVALDPRTASLLENGRFPELKKLGLHYEKRDDTMYECDPRVLLQSCLHRLSYLRKLKLIGTTEIPQNAANVCVFPSTITKITLTKFGFFNSSAMNTLGKLPNLLVLKLSSQKSDASFDLHCAAGGFSKLQVFVMVEIMVKSWRVVKGSMPSVQRVVVRNCEYLTELPEEIWSLTALCQVNVSCPSRKLAKTLQNLEVKNKRKLVVYPRSTN*

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