Glyma18g52360 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g52360

Feature Type:	gene_model
Chromosome:	Gm18
Start:	60989651
stop:	60991637
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g52360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G01470	AT	Annotation by Michelle Graham. TAIR10: tonoplast intrinsic protein 1;3 \| chr4:625092-625850 REVERSE LENGTH=252	SoyBase	E_val: 3.00E-151	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0015840	GO-bp	Annotation by Michelle Graham. GO Biological Process: urea transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0015204	GO-mf	Annotation by Michelle Graham. GO Molecular Function: urea transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015250	GO-mf	Annotation by Michelle Graham. GO Molecular Function: water channel activity	SoyBase	N/A	ISS
KOG0223	KOG	Aquaporin (major intrinsic protein family)	JGI		ISS
PTHR19139	Panther	AQUAPORIN TRANSPORTER	JGI		ISS
PTHR19139:SF54	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00230	PFAM	Major intrinsic protein	JGI		ISS
UniRef100_D7M4V2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GAMMA-TIP3/TIP1_3 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M4V2_ARALL	SoyBase	E_val: 6.00E-149	ISS
UniRef100_I1N530	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N530_SOYBN	SoyBase	E_val: 2.00E-176	ISS

Expression Patterns of Glyma18g52360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g52360

Paralog	Evidence	Comments
Glyma02g10520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g52360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g286700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g52360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g52360

Limit To All Plant Sequences

>Glyma18g52360.1   sequence type=CDS   gene model=Glyma18g52360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATGCATAGAATTGCAATTGGGACCCCTGGAGAGGCTGCCCAACCTGATGCAATCAGAGCAGCATTTGCAGAATTCTTCTGCATGATCATTTTTGTTTTTGCTGGGGAAGGATCTGGCATGGCTTACAGCAAACTTACCAACAACGGACCTGCAACACCAGCTGGTCTCATTGCTGCATCACTATCTCATGCATTTGGGCTTTTTGTGGCCGTTTCTGTTGGGGCAAACATTTCTGGTGGTCATGTGAACCCTGCAGTCACATTTGGTGCCTTCATAGGAGGAAACATAACCTTGTTGAGAAGTATTTTGTATTGGATTGCACAGTTGTTTGGTTCAGTTGTTGCATGCATTCTTCTAAAGCATGCAACTGGTGGAATGGAAACATCAGGTTTTTCTCTATCCCCTGGTGTGTCTGTGTGGAATGCATTGGTTTTTGAAATAGTGATGACTTTTGGGTTGGTATACACAGTTTATGCCACAGCAGTGGACCCAAAGAAAGGGAATGCGGGAGTTGTTGCACCAATTGCAATTGGTTTTATTGTGGGTGCCAACATCTTAGTTGGTGGTGCATTTGATGGTGCATCAATGAACCCAGCTGTGTCCTTTGGCCCTGCTGTGGTTACATGGTCATGGACCCATCACTGGGTCTATTGGGTTGGTCCATTCATTGGTGCAGCAATTGCTGCAATTATCTATGATAATATCTTCATTGGAGATGATGGCCATGAACCTCTTTCAAGCAGTGACTTCTAG

Predicted protein sequences of Glyma18g52360

Limit To All Plant Sequences

>Glyma18g52360.1   sequence type=predicted peptide   gene model=Glyma18g52360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMHRIAIGTPGEAAQPDAIRAAFAEFFCMIIFVFAGEGSGMAYSKLTNNGPATPAGLIAASLSHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRSILYWIAQLFGSVVACILLKHATGGMETSGFSLSPGVSVWNALVFEIVMTFGLVYTVYATAVDPKKGNAGVVAPIAIGFIVGANILVGGAFDGASMNPAVSFGPAVVTWSWTHHWVYWVGPFIGAAIAAIIYDNIFIGDDGHEPLSSSDF*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain