Glyma18g52350 - SoyBase

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Report for Sequence Feature Glyma18g52350

Feature Type:	gene_model
Chromosome:	Gm18
Start:	60978884
stop:	60988329
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g52350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G55320	AT	Annotation by Michelle Graham. TAIR10: P-glycoprotein 20 \| chr3:20507391-20513393 REVERSE LENGTH=1408	SoyBase	E_val: 0	ISS
GO:0006200	GO-bp	Annotation by Michelle Graham. GO Biological Process: ATP catabolic process	SoyBase	N/A	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0010048	GO-bp	Annotation by Michelle Graham. GO Biological Process: vernalization response	SoyBase	N/A	ISS
GO:0010315	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin efflux	SoyBase	N/A	ISS
GO:0010540	GO-bp	Annotation by Michelle Graham. GO Biological Process: basipetal auxin transport	SoyBase	N/A	ISS
GO:0010541	GO-bp	Annotation by Michelle Graham. GO Biological Process: acropetal auxin transport	SoyBase	N/A	ISS
GO:0043481	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light	SoyBase	N/A	ISS
GO:0048440	GO-bp	Annotation by Michelle Graham. GO Biological Process: carpel development	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
GO:0042626	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances	SoyBase	N/A	ISS
KOG0058	KOG	Peptide exporter, ABC superfamily	JGI		ISS
PTHR24221	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24221:SF96	Panther		JGI		ISS
PF00005	PFAM	ABC transporter	JGI		ISS
PF00664	PFAM	ABC transporter transmembrane region	JGI		ISS
UniRef100_B9HTN2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Multidrug/pheromone exporter, MDR family, ABC transporter family n=1 Tax=Populus trichocarpa RepID=B9HTN2_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1N529	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N529_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g52350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g52350

Paralog	Evidence	Comments
Glyma02g10530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g52350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g286600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g52350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g52350

Limit To All Plant Sequences

>Glyma18g52350.1   sequence type=CDS   gene model=Glyma18g52350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGTATCGAGAGGGTTGTTCGGGTGGTCCCCGCCGCACGTGCAACCGCTCACGCCGGTATCGGAGGTTTCGGAGCCACCGGAGTCACCGTCGCCATACCTGGACCCCGGCGCAGAGACCTCCGCGTCGCAGCAGGTGGAGGCGGAGGAGGAGATGGAGGAGCCGGAGGAGATCGAGCCGCCGCCCGCCGCGGTTCCGTTTTCGCAGCTCTTCGCATGCGCCGACCGCTTCGATTGGTTCCTCATGGCCATTGGTTCCGTCGCCGCCGCGGCGCACGGCACCGCGCTCGTCGTTTACTTGCACTACTTCGCGAAGATCATCCACGTGCTGCGGTTGGATCCTCCTAACGGCACGTCGCAGGAGCAGTTTGACAGGTTCACCGAGCTTGCTTTAACCATTGTTTATATTGCTGCGGGAGTTTTTGTTGCTGGTTGGATTGAGGTTTCATGTTGGATTTTGACGGGAGAACGGCAGACTGCTGTCATCAGGTCAAATTATGTTCAAGTACTACTTAATCAAGACATGAGTTTTTTTGATACTTATGGGAATAATGGAGACATTGTGAGTCAAGTATTAAGTGATGTGCTGCTTATCCAGTCCGCCCTTAGTGAAAAAGTTGGGAATTATATTCATAATATGGCTACATTCTTCAGTGGTCTTGTCATTGGCCTTGTCAATTGTTGGCAGATTGCTTTGATAACGTTAGCCACGGGTCCGTTTATTGTTGCTGCTGGAGGAATATCAAACATATTCCTCCATAGGCTTGCAGAGAATATCCAAGATGCATATGCTGAAGCAGCTAGCATTGCTGAACAGGCAGTTTCCTATATAAGGACATTGTATGCATTTTCAAATGAAACTTTGGCTAAGTATTCATATGCAACATCACTGCAAGCTACTCTTAGATATGGTATATTAATAAGTCTTGTTCAAGGGCTTGGTCTTGGATTTACTTATGGACTAGCAATATGTTCTTGTGCATTACAACTCTGGGTTGGAAGATTCTTGGTTATTCACGGAAAAGCACATGGTGGTGAAATTATAACAGCTCTTTTTGCTGTAATTCTAAGTGGCCTGGGATTAAATCAAGCAGCGACAAATTTCTACTCATTTGATCAGGGACGAATAGCTGCTTATAGACTATTTGAGATGATAAGTCGGTCATCCTCATCTGTTAATCATGATGGCACTTCCCCTGATTCTGTGCTAGGAAATATAGAGTTCCGGAATGTTTATTTCAGCTATCTTTCTCGTCCTGAAATCCCTATCTTGAGTGGATTTTATCTCACTGTACCTGCTAAGAAAGCTGTAGCACTTGTTGGCAGAAATGGCTCTGGAAAAAGTAGTATTATTCCACTCATGGAGCGTTTTTATGATCCTACATTAGGAGAAGTTCTTTTAGATGGTGAAAATATCAAGAATTTGAAACTGGAATGGCTGAGGAGCCAAATAGGACTAGTCACCCAGGAGCCTGCTTTGCTCAGTTTGAGTATAACAGACAACATTGCTTATGGGAGGGATGCTACCATGGATCAAATTGAAGAGGCTGCTAAAATAGCTCATGCACATACATTTATCAGCTCATTAGAGAAAGGTTATGACACACAGGTTGGCAGGGCTTGTCTAGCTTTGACCGAAGAGCAGAAAATAAAACTTTCTATTGCTAGAGCTGTGCTTCTAAATCCATCAATTCTTCTTCTTGATGAGGTTACTGGTGGACTTGATTTTGAGGCTGAGAGGGCTGTTCAGGGGGCTCTGGATTTGCTTATGTTGGGACGCTCAACAATAATAATTGCTCGAAGGCTTAGTCTCATAAAGAATGCTGACTATATAGCCGTTATGGAGGAAGGTCAGCTTGTTGAAATGGGTACTCATGATGAATTATTAACACTGGATGGCTTATATGCAGAGCTTCATCGATGTGAAGAGGCCGCAAAACTTCCCAAGAGGATGCCTGTTCGAAACTACAAGGAAACTTCAGCCTTCCAAATTGAGAAGGATTCTTCAAGTCATAGCTTCAAAGAACCATCATCCCCTAAAATGATGAAGTCACCCTCTCTTCAAAGAGTTTCTAATGTATCCCGACCTCCAGATGGCGTCTTTAACTTGCTAGAATCACCTCAAGTCCGGAGTCCACCGCCTGAGAAAATGCTTGAAAATGGTCTGGCGTTGGATGTAGCAGATAAGGAGCCATCAATAAGAAGGCAGGATAGTTTTGAAATGAGACTGCCGGAGTTACCCAAGATTGATGTTCATTCTGTGCAACGACATATGTCAAATGATTCTGATCCAGAATCTCCCATTTCACCTCTTTTAACATCTGATCCTAAAAGTGAACGCTCCCATTCACAGACTTTTAGTAGACCACATAGTCATTCTGATGATGTTTCAGTTATAATGAGAGAAACAAAGGGTGCACGGCATCGAAAACCACCATCACTGCAGAAGCTGGCTGAGCTTAGTTTTGCTGAGTGGCTTTATGCTGTGTTAGGAAGCATAGGTGCTGCTATCTTTGGGTCTTTCAATCCCCTTCTTGCTTATGTTATTGGTCTTGTGGTGACAGCTTACTATAGAATTGATGACACTCATCACCTTGAACGGGAGGTAGACAGGTGGTGCTTGATCATTGGCTGCATGGGTATTGTAACTTTAGTTGCCAACTTTTTACAGCATTTCTACTTTGGTATTATGGGAGAGAAAATGACGGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTACGCAATGAAGTGGGATGGTTTGATGATGAGGAAAACAGTGCTGACAATTTGTCCATGCGATTGGCCAATGATGCTACTTTTGTGCGAGCTGCTTTTAGCAACAGGCTTTCCATATTTATACAGGACAGTGCTGCAGTTATTGTTGGTCTTCTCATTGGTGCTTTGCTGCACTGGCGGTTAGCACTTGTGGCTTTTGCAACCCTTCCAATTCTCTCTGTTTCTGCCATTGCCCAGAAATTTTGGCTTGCGGGATTTTCGAGGGGCATCCAGGAAATGCACAAAAAGGCATCTTTGGTTCTTGAAGATGCAGTTAGGAACATTTACACTGTTGTTGCCTTTTGTGCTGGTAATAAGGTAATGGAGCTCTACAGGCTGCAATTAAAGAAAATATTTAAGCAGAGCTTTCTTCATGGGATGGCAATTGGTTTTGCATTTGGCTTTTCACAGTTTCTACTTTTTGCCTGTAATGCCCTGCTACTTTGGTACACTGCAATATGTATAAAACGTGGTTACATGGATCCACCTACTGCACTCAAGGAGTACATGGTTTTTTCATTTGCAACATTTGCACTTGTGGAGCCTTTTGGATTGGCTCCTTACATACTTAAACGACGAAAATCTCTCATATCTGTGTTTGACATTATAGATCGTGTGCCTAAAATTGATCCTGATGATACCTCAGCATTGAAGCCACCCAATGTATATGGAAGCCTCGAGTTAAAAAATGTTGATTTTTGTTACCCATCTCGTCCTGAAGTGTTGGTATTGAGCAATTTTAGCCTCAAAGTCACTGGGGGCCAAACAGTTGCTATTGTGGGAGTTTCTGGGTCAGGAAAGAGCACTATAATATCTTTGATCGAGAGGTTTTATGATCCAGTTGCAGGCCAAGTTTTCCTGGATGGTAGGGATTTAAAGGAATATAACTTGAGATGGTTGAGGAGCCACCTTGGTCTTGTTCAGCAGGAACCTATTATCTTCTCAACAACCATAAGGGAAAACATTATATATGCAAGGCATAATGCAACTGAAGCTGAGATGAAAGAGGCTGCAAGAATAGCAAATGCTCATCATTTCATTAGCAGTTTGCCTCATGGTTATGATACTCATGTTGGGATGAGAGGTGTTGACTTAACCCCAGGACAGAAACAGAGAATTGCAATTGCTAGGGTAGTGCTGAAAAATGCCCCTATCTTGTTGTTGGATGAAGCTAGTTCAGCAATTGAATCTGAGTCAAGCCGAGTAGTGCAAGAGGCTCTAGACACGCTAATTATGGGAAACAAGACTACTATTTTAATAGCACATAGGGCTGCAATGATGAGGCATGTGGACAATATTGTAGTGCTTAATGGAGGACGGATAGTGGAGGAGGGCAGTCATGATACATTGGTAGCCAAGAATGGTTTGTATGTCCGACTGATGCAACCTCATTTTGGTAAGGCTTTGCGTCAACATCGGCTTGTTTAG

Predicted protein sequences of Glyma18g52350

Limit To All Plant Sequences

>Glyma18g52350.1   sequence type=predicted peptide   gene model=Glyma18g52350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMVSRGLFGWSPPHVQPLTPVSEVSEPPESPSPYLDPGAETSASQQVEAEEEMEEPEEIEPPPAAVPFSQLFACADRFDWFLMAIGSVAAAAHGTALVVYLHYFAKIIHVLRLDPPNGTSQEQFDRFTELALTIVYIAAGVFVAGWIEVSCWILTGERQTAVIRSNYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGLVNCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFSNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHGKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSSVNHDGTSPDSVLGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSITDNIAYGRDATMDQIEEAAKIAHAHTFISSLEKGYDTQVGRACLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQGALDLLMLGRSTIIIARRLSLIKNADYIAVMEEGQLVEMGTHDELLTLDGLYAELHRCEEAAKLPKRMPVRNYKETSAFQIEKDSSSHSFKEPSSPKMMKSPSLQRVSNVSRPPDGVFNLLESPQVRSPPPEKMLENGLALDVADKEPSIRRQDSFEMRLPELPKIDVHSVQRHMSNDSDPESPISPLLTSDPKSERSHSQTFSRPHSHSDDVSVIMRETKGARHRKPPSLQKLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLVVTAYYRIDDTHHLEREVDRWCLIIGCMGIVTLVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDDEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVGLLIGALLHWRLALVAFATLPILSVSAIAQKFWLAGFSRGIQEMHKKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFKQSFLHGMAIGFAFGFSQFLLFACNALLLWYTAICIKRGYMDPPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFDIIDRVPKIDPDDTSALKPPNVYGSLELKNVDFCYPSRPEVLVLSNFSLKVTGGQTVAIVGVSGSGKSTIISLIERFYDPVAGQVFLDGRDLKEYNLRWLRSHLGLVQQEPIIFSTTIRENIIYARHNATEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSAIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGSHDTLVAKNGLYVRLMQPHFGKALRQHRLV*

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